Complete plastid genome of Vanda concolor (Orchidaceae, Aeridinae)

Vanda is one of the five most horticulturally important genera in Orchidaceae. In this study, we assembled the complete plastid genome of an important cultivated species, V. concolor. The plastome was 149,474 bp in length, containing a large single-copy region (LSC) of 85,678 bp, a small single-copy...

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Autores principales: Chen, Jin-Liao, Tu, Xiong-De, Liu, Ding-Kun, Ai, Ye
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707440/
https://www.ncbi.nlm.nih.gov/pubmed/33366144
http://dx.doi.org/10.1080/23802359.2019.1679049
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author Chen, Jin-Liao
Tu, Xiong-De
Liu, Ding-Kun
Ai, Ye
author_facet Chen, Jin-Liao
Tu, Xiong-De
Liu, Ding-Kun
Ai, Ye
author_sort Chen, Jin-Liao
collection PubMed
description Vanda is one of the five most horticulturally important genera in Orchidaceae. In this study, we assembled the complete plastid genome of an important cultivated species, V. concolor. The plastome was 149,474 bp in length, containing a large single-copy region (LSC) of 85,678 bp, a small single-copy region (SSC) of 12,002 bp, and two inverted repeat regions (IR) of 25,897 bp. A total of 127 genes were predicted, including 38 tRNA, 8 rRNA, and 74 protein-coding genes. Phylogenetic analysis of 21 representative plastome of the subtribe Aeridinae suggested V. concolor to be sister to V. brunnea and that this pair is sister to Neofinetia.
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spelling pubmed-77074402020-12-22 Complete plastid genome of Vanda concolor (Orchidaceae, Aeridinae) Chen, Jin-Liao Tu, Xiong-De Liu, Ding-Kun Ai, Ye Mitochondrial DNA B Resour Mitogenome Announcement Vanda is one of the five most horticulturally important genera in Orchidaceae. In this study, we assembled the complete plastid genome of an important cultivated species, V. concolor. The plastome was 149,474 bp in length, containing a large single-copy region (LSC) of 85,678 bp, a small single-copy region (SSC) of 12,002 bp, and two inverted repeat regions (IR) of 25,897 bp. A total of 127 genes were predicted, including 38 tRNA, 8 rRNA, and 74 protein-coding genes. Phylogenetic analysis of 21 representative plastome of the subtribe Aeridinae suggested V. concolor to be sister to V. brunnea and that this pair is sister to Neofinetia. Taylor & Francis 2019-10-21 /pmc/articles/PMC7707440/ /pubmed/33366144 http://dx.doi.org/10.1080/23802359.2019.1679049 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Chen, Jin-Liao
Tu, Xiong-De
Liu, Ding-Kun
Ai, Ye
Complete plastid genome of Vanda concolor (Orchidaceae, Aeridinae)
title Complete plastid genome of Vanda concolor (Orchidaceae, Aeridinae)
title_full Complete plastid genome of Vanda concolor (Orchidaceae, Aeridinae)
title_fullStr Complete plastid genome of Vanda concolor (Orchidaceae, Aeridinae)
title_full_unstemmed Complete plastid genome of Vanda concolor (Orchidaceae, Aeridinae)
title_short Complete plastid genome of Vanda concolor (Orchidaceae, Aeridinae)
title_sort complete plastid genome of vanda concolor (orchidaceae, aeridinae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707440/
https://www.ncbi.nlm.nih.gov/pubmed/33366144
http://dx.doi.org/10.1080/23802359.2019.1679049
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