The complete chloroplast genome of Cotoneaster schantungensis

Cotoneaster schantungensis is an endangered vulnerable species restricted to Shandong Province. In this study, we report the sequencing of the C. schantungensis chloroplast (cp) genome using the Illumina Novaseq platform for the first time. The complete C. schantungensis cp genome is 159,883 bp in l...

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Detalles Bibliográficos
Autores principales: Li, Xue-Yun, Li, Wei, Liu, Qing-hua, Xie, Xiao-Man, Lu, Yi-Zeng, Zhang, Cui-Ping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707447/
https://www.ncbi.nlm.nih.gov/pubmed/33366178
http://dx.doi.org/10.1080/23802359.2019.1681923
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author Li, Xue-Yun
Li, Wei
Liu, Qing-hua
Xie, Xiao-Man
Lu, Yi-Zeng
Zhang, Cui-Ping
author_facet Li, Xue-Yun
Li, Wei
Liu, Qing-hua
Xie, Xiao-Man
Lu, Yi-Zeng
Zhang, Cui-Ping
author_sort Li, Xue-Yun
collection PubMed
description Cotoneaster schantungensis is an endangered vulnerable species restricted to Shandong Province. In this study, we report the sequencing of the C. schantungensis chloroplast (cp) genome using the Illumina Novaseq platform for the first time. The complete C. schantungensis cp genome is 159,883 bp in length and contains two inverted repeats (IRs), separated by a large single-copy region (LSC) and a small single-copy region (SSC). A total of 132 unique coding genes, including 85 protein-coding genes, 39 tRNA genes, and 8 rRNA genes were identified. The maximum likelihood phylogenetic analysis revealed that C. schantungensis is closely related to Eriobotrya japonica.
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spelling pubmed-77074472020-12-22 The complete chloroplast genome of Cotoneaster schantungensis Li, Xue-Yun Li, Wei Liu, Qing-hua Xie, Xiao-Man Lu, Yi-Zeng Zhang, Cui-Ping Mitochondrial DNA B Resour Mitogenome Announcement Cotoneaster schantungensis is an endangered vulnerable species restricted to Shandong Province. In this study, we report the sequencing of the C. schantungensis chloroplast (cp) genome using the Illumina Novaseq platform for the first time. The complete C. schantungensis cp genome is 159,883 bp in length and contains two inverted repeats (IRs), separated by a large single-copy region (LSC) and a small single-copy region (SSC). A total of 132 unique coding genes, including 85 protein-coding genes, 39 tRNA genes, and 8 rRNA genes were identified. The maximum likelihood phylogenetic analysis revealed that C. schantungensis is closely related to Eriobotrya japonica. Taylor & Francis 2019-10-24 /pmc/articles/PMC7707447/ /pubmed/33366178 http://dx.doi.org/10.1080/23802359.2019.1681923 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Li, Xue-Yun
Li, Wei
Liu, Qing-hua
Xie, Xiao-Man
Lu, Yi-Zeng
Zhang, Cui-Ping
The complete chloroplast genome of Cotoneaster schantungensis
title The complete chloroplast genome of Cotoneaster schantungensis
title_full The complete chloroplast genome of Cotoneaster schantungensis
title_fullStr The complete chloroplast genome of Cotoneaster schantungensis
title_full_unstemmed The complete chloroplast genome of Cotoneaster schantungensis
title_short The complete chloroplast genome of Cotoneaster schantungensis
title_sort complete chloroplast genome of cotoneaster schantungensis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707447/
https://www.ncbi.nlm.nih.gov/pubmed/33366178
http://dx.doi.org/10.1080/23802359.2019.1681923
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