The first complete chloroplast genome of Quercus coccinea (Scarlet Oak) and its phylogenetic position within Fagaceae

Quercus coccinea is a native to North America, which grows well in acidic soil and resists cold to extreme low temperature –40 °C. The chloroplast (cp) genome of Q. coccinea, sequenced based on next-generation platform (NEOSAT), is 161,298 bp in size. The cp genome encodes 133 genes, including 88 pr...

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Autores principales: Yang, Xuemei, Yin, Yanlei, Feng, Lijuan, Tang, Haixia, Wang, Fei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707449/
https://www.ncbi.nlm.nih.gov/pubmed/33366118
http://dx.doi.org/10.1080/23802359.2019.1677189
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author Yang, Xuemei
Yin, Yanlei
Feng, Lijuan
Tang, Haixia
Wang, Fei
author_facet Yang, Xuemei
Yin, Yanlei
Feng, Lijuan
Tang, Haixia
Wang, Fei
author_sort Yang, Xuemei
collection PubMed
description Quercus coccinea is a native to North America, which grows well in acidic soil and resists cold to extreme low temperature –40 °C. The chloroplast (cp) genome of Q. coccinea, sequenced based on next-generation platform (NEOSAT), is 161,298 bp in size. The cp genome encodes 133 genes, including 88 protein-coding genes (PCGs), 8 rRNA genes, and 37 tRNA genes. Phylogenetic relationship analysis based on complete cp genome sequences exhibited that both of Q. coccinea and Q. rubra were phylogenetically closer to Q. aliena var. Acutiserrata.
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spelling pubmed-77074492020-12-22 The first complete chloroplast genome of Quercus coccinea (Scarlet Oak) and its phylogenetic position within Fagaceae Yang, Xuemei Yin, Yanlei Feng, Lijuan Tang, Haixia Wang, Fei Mitochondrial DNA B Resour Mitogenome Announcement Quercus coccinea is a native to North America, which grows well in acidic soil and resists cold to extreme low temperature –40 °C. The chloroplast (cp) genome of Q. coccinea, sequenced based on next-generation platform (NEOSAT), is 161,298 bp in size. The cp genome encodes 133 genes, including 88 protein-coding genes (PCGs), 8 rRNA genes, and 37 tRNA genes. Phylogenetic relationship analysis based on complete cp genome sequences exhibited that both of Q. coccinea and Q. rubra were phylogenetically closer to Q. aliena var. Acutiserrata. Taylor & Francis 2019-10-18 /pmc/articles/PMC7707449/ /pubmed/33366118 http://dx.doi.org/10.1080/23802359.2019.1677189 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Yang, Xuemei
Yin, Yanlei
Feng, Lijuan
Tang, Haixia
Wang, Fei
The first complete chloroplast genome of Quercus coccinea (Scarlet Oak) and its phylogenetic position within Fagaceae
title The first complete chloroplast genome of Quercus coccinea (Scarlet Oak) and its phylogenetic position within Fagaceae
title_full The first complete chloroplast genome of Quercus coccinea (Scarlet Oak) and its phylogenetic position within Fagaceae
title_fullStr The first complete chloroplast genome of Quercus coccinea (Scarlet Oak) and its phylogenetic position within Fagaceae
title_full_unstemmed The first complete chloroplast genome of Quercus coccinea (Scarlet Oak) and its phylogenetic position within Fagaceae
title_short The first complete chloroplast genome of Quercus coccinea (Scarlet Oak) and its phylogenetic position within Fagaceae
title_sort first complete chloroplast genome of quercus coccinea (scarlet oak) and its phylogenetic position within fagaceae
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707449/
https://www.ncbi.nlm.nih.gov/pubmed/33366118
http://dx.doi.org/10.1080/23802359.2019.1677189
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