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The complete chloroplast genome of Impatiens uliginosa Franch., an endemic species in Southwest China
The complete chloroplast genome sequence of Impatiens uliginosa Franch., an endemic species in Southwest China, we research genetic and phylogenetic relationship with other species in an effort to provide genomic resources useful for promoting its conservation and utilization. The total chloroplast...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707457/ https://www.ncbi.nlm.nih.gov/pubmed/33366215 http://dx.doi.org/10.1080/23802359.2019.1687024 |
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author | Luo, Chao Huang, Wulue Zhu, Jiapeng Feng, Zhixi Liu, Yingli Li, Yang Li, Xinyi Huang, Haiquan Huang, Meijuan |
author_facet | Luo, Chao Huang, Wulue Zhu, Jiapeng Feng, Zhixi Liu, Yingli Li, Yang Li, Xinyi Huang, Haiquan Huang, Meijuan |
author_sort | Luo, Chao |
collection | PubMed |
description | The complete chloroplast genome sequence of Impatiens uliginosa Franch., an endemic species in Southwest China, we research genetic and phylogenetic relationship with other species in an effort to provide genomic resources useful for promoting its conservation and utilization. The total chloroplast genome size of I. uliginosa is 152,609 bp, with a typical quadripartite structure including a pair of inverted repeat (IRs, 25,871 bp) regions separated by a small single copy (SSC, 17,502 bp) region and a large single copy (LSC, 83,365 bp) region. The overall GC content of I. uliginosa plastid genome was 36.8%. The whole chloroplast genome contains 136 genes, including 89 protein-coding genes (PCGs), 38 transfer RNA genes (tRNAs), and 8 ribosomal RNA genes (rRNAs). Among these genes, 15 genes have one intron and 2 genes contain two introns. To investigate the evolution status, the phylogenetic tree based on APG III from 12 complete chloroplast plastomes of Ericales supports close relationships. According to the phylogenetic topologies, I. uliginosa was closely related to I. piufanensis. |
format | Online Article Text |
id | pubmed-7707457 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77074572020-12-22 The complete chloroplast genome of Impatiens uliginosa Franch., an endemic species in Southwest China Luo, Chao Huang, Wulue Zhu, Jiapeng Feng, Zhixi Liu, Yingli Li, Yang Li, Xinyi Huang, Haiquan Huang, Meijuan Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome sequence of Impatiens uliginosa Franch., an endemic species in Southwest China, we research genetic and phylogenetic relationship with other species in an effort to provide genomic resources useful for promoting its conservation and utilization. The total chloroplast genome size of I. uliginosa is 152,609 bp, with a typical quadripartite structure including a pair of inverted repeat (IRs, 25,871 bp) regions separated by a small single copy (SSC, 17,502 bp) region and a large single copy (LSC, 83,365 bp) region. The overall GC content of I. uliginosa plastid genome was 36.8%. The whole chloroplast genome contains 136 genes, including 89 protein-coding genes (PCGs), 38 transfer RNA genes (tRNAs), and 8 ribosomal RNA genes (rRNAs). Among these genes, 15 genes have one intron and 2 genes contain two introns. To investigate the evolution status, the phylogenetic tree based on APG III from 12 complete chloroplast plastomes of Ericales supports close relationships. According to the phylogenetic topologies, I. uliginosa was closely related to I. piufanensis. Taylor & Francis 2019-11-06 /pmc/articles/PMC7707457/ /pubmed/33366215 http://dx.doi.org/10.1080/23802359.2019.1687024 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Luo, Chao Huang, Wulue Zhu, Jiapeng Feng, Zhixi Liu, Yingli Li, Yang Li, Xinyi Huang, Haiquan Huang, Meijuan The complete chloroplast genome of Impatiens uliginosa Franch., an endemic species in Southwest China |
title | The complete chloroplast genome of Impatiens uliginosa Franch., an endemic species in Southwest China |
title_full | The complete chloroplast genome of Impatiens uliginosa Franch., an endemic species in Southwest China |
title_fullStr | The complete chloroplast genome of Impatiens uliginosa Franch., an endemic species in Southwest China |
title_full_unstemmed | The complete chloroplast genome of Impatiens uliginosa Franch., an endemic species in Southwest China |
title_short | The complete chloroplast genome of Impatiens uliginosa Franch., an endemic species in Southwest China |
title_sort | complete chloroplast genome of impatiens uliginosa franch., an endemic species in southwest china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707457/ https://www.ncbi.nlm.nih.gov/pubmed/33366215 http://dx.doi.org/10.1080/23802359.2019.1687024 |
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