Characterisation of the complete chloroplast genome of Lycoris longituba (Amaryllidaceae)
Lycoris longituba is a species in the Amaryllidaceae with high ornamental and medicinal value. It is also an endangered species in East China due to the narrow distribution. Here, we assembled and characterised the complete chloroplast (cp) genome of this species using high throughput sequencing and...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707485/ https://www.ncbi.nlm.nih.gov/pubmed/33366189 http://dx.doi.org/10.1080/23802359.2019.1681324 |
_version_ | 1783617358453014528 |
---|---|
author | Zhang, Fengjiao Tong, Haiying Yang, Hong Wang, Tao Zhuang, Weibing Shu, Xiaochun Wang, Zhong |
author_facet | Zhang, Fengjiao Tong, Haiying Yang, Hong Wang, Tao Zhuang, Weibing Shu, Xiaochun Wang, Zhong |
author_sort | Zhang, Fengjiao |
collection | PubMed |
description | Lycoris longituba is a species in the Amaryllidaceae with high ornamental and medicinal value. It is also an endangered species in East China due to the narrow distribution. Here, we assembled and characterised the complete chloroplast (cp) genome of this species using high throughput sequencing and bioinformatics analysis. As a result, the whole cp genome size is 158,484 bp, including two inverted repeat (IR) regions of 26,765 bp, large single-copy region (LSC) of 86,458 bp and small single-copy region (SSC) of 18,496 bp. A total of 137 genes were identified, including 87 protein-coding genes, 42 tRNA genes, and eight rRNA genes. Phylogenomic analysis was carried out using complete cp genome of 18 species in five families, supporting the closer relationship between L. longituba and L. squamigera than L. radiata and L. sprengeri in Amaryllidaceae. |
format | Online Article Text |
id | pubmed-7707485 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77074852020-12-22 Characterisation of the complete chloroplast genome of Lycoris longituba (Amaryllidaceae) Zhang, Fengjiao Tong, Haiying Yang, Hong Wang, Tao Zhuang, Weibing Shu, Xiaochun Wang, Zhong Mitochondrial DNA B Resour Mitogenome Announcement Lycoris longituba is a species in the Amaryllidaceae with high ornamental and medicinal value. It is also an endangered species in East China due to the narrow distribution. Here, we assembled and characterised the complete chloroplast (cp) genome of this species using high throughput sequencing and bioinformatics analysis. As a result, the whole cp genome size is 158,484 bp, including two inverted repeat (IR) regions of 26,765 bp, large single-copy region (LSC) of 86,458 bp and small single-copy region (SSC) of 18,496 bp. A total of 137 genes were identified, including 87 protein-coding genes, 42 tRNA genes, and eight rRNA genes. Phylogenomic analysis was carried out using complete cp genome of 18 species in five families, supporting the closer relationship between L. longituba and L. squamigera than L. radiata and L. sprengeri in Amaryllidaceae. Taylor & Francis 2019-10-25 /pmc/articles/PMC7707485/ /pubmed/33366189 http://dx.doi.org/10.1080/23802359.2019.1681324 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Zhang, Fengjiao Tong, Haiying Yang, Hong Wang, Tao Zhuang, Weibing Shu, Xiaochun Wang, Zhong Characterisation of the complete chloroplast genome of Lycoris longituba (Amaryllidaceae) |
title | Characterisation of the complete chloroplast genome of Lycoris longituba (Amaryllidaceae) |
title_full | Characterisation of the complete chloroplast genome of Lycoris longituba (Amaryllidaceae) |
title_fullStr | Characterisation of the complete chloroplast genome of Lycoris longituba (Amaryllidaceae) |
title_full_unstemmed | Characterisation of the complete chloroplast genome of Lycoris longituba (Amaryllidaceae) |
title_short | Characterisation of the complete chloroplast genome of Lycoris longituba (Amaryllidaceae) |
title_sort | characterisation of the complete chloroplast genome of lycoris longituba (amaryllidaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707485/ https://www.ncbi.nlm.nih.gov/pubmed/33366189 http://dx.doi.org/10.1080/23802359.2019.1681324 |
work_keys_str_mv | AT zhangfengjiao characterisationofthecompletechloroplastgenomeoflycorislongitubaamaryllidaceae AT tonghaiying characterisationofthecompletechloroplastgenomeoflycorislongitubaamaryllidaceae AT yanghong characterisationofthecompletechloroplastgenomeoflycorislongitubaamaryllidaceae AT wangtao characterisationofthecompletechloroplastgenomeoflycorislongitubaamaryllidaceae AT zhuangweibing characterisationofthecompletechloroplastgenomeoflycorislongitubaamaryllidaceae AT shuxiaochun characterisationofthecompletechloroplastgenomeoflycorislongitubaamaryllidaceae AT wangzhong characterisationofthecompletechloroplastgenomeoflycorislongitubaamaryllidaceae |