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The complete chloroplast genome sequence of Spiraea blumei G. Don (Rosaceae)
Spiraea blumei G. Don is an ornamental shrub widely distributed in Eastern Asia. Here, we reported and characterized the complete chloroplast (cp) genome sequence of S. blumei (GenBank accession number: MN418904) to provide genomic resources for promoting its conservation. The total chloroplast geno...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707486/ https://www.ncbi.nlm.nih.gov/pubmed/33366136 http://dx.doi.org/10.1080/23802359.2019.1678434 |
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author | Huo, Yan Yan, Ming Zhao, Xueqing Zhu, Zunling Yuan, Zhaohe |
author_facet | Huo, Yan Yan, Ming Zhao, Xueqing Zhu, Zunling Yuan, Zhaohe |
author_sort | Huo, Yan |
collection | PubMed |
description | Spiraea blumei G. Don is an ornamental shrub widely distributed in Eastern Asia. Here, we reported and characterized the complete chloroplast (cp) genome sequence of S. blumei (GenBank accession number: MN418904) to provide genomic resources for promoting its conservation. The total chloroplast genome is 155,957 bp in length and contains the typical chloroplast structure, including two inverted repeat (IR) regions of 26,343 bp, a large single-copy (LSC) region of 84,384 bp, and a small single-copy (SSC) region of 18,887 bp. The overall guanine-cytosine (GC) content of the S. blumei chloroplast genome is 36.8%. The cp genome encodes 133 unique genes, including 85 protein-coding genes (PCGs), 40 tRNA genes, and 8 rRNA genes. We used the cp genome of S. blumei and 26 other cp genomes to perform a phylogenetic analysis, which indicated that S. blumei was closely related to S. martini in Rosaceae. |
format | Online Article Text |
id | pubmed-7707486 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77074862020-12-22 The complete chloroplast genome sequence of Spiraea blumei G. Don (Rosaceae) Huo, Yan Yan, Ming Zhao, Xueqing Zhu, Zunling Yuan, Zhaohe Mitochondrial DNA B Resour Mitogenome Announcement Spiraea blumei G. Don is an ornamental shrub widely distributed in Eastern Asia. Here, we reported and characterized the complete chloroplast (cp) genome sequence of S. blumei (GenBank accession number: MN418904) to provide genomic resources for promoting its conservation. The total chloroplast genome is 155,957 bp in length and contains the typical chloroplast structure, including two inverted repeat (IR) regions of 26,343 bp, a large single-copy (LSC) region of 84,384 bp, and a small single-copy (SSC) region of 18,887 bp. The overall guanine-cytosine (GC) content of the S. blumei chloroplast genome is 36.8%. The cp genome encodes 133 unique genes, including 85 protein-coding genes (PCGs), 40 tRNA genes, and 8 rRNA genes. We used the cp genome of S. blumei and 26 other cp genomes to perform a phylogenetic analysis, which indicated that S. blumei was closely related to S. martini in Rosaceae. Taylor & Francis 2019-10-21 /pmc/articles/PMC7707486/ /pubmed/33366136 http://dx.doi.org/10.1080/23802359.2019.1678434 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Huo, Yan Yan, Ming Zhao, Xueqing Zhu, Zunling Yuan, Zhaohe The complete chloroplast genome sequence of Spiraea blumei G. Don (Rosaceae) |
title | The complete chloroplast genome sequence of Spiraea blumei G. Don (Rosaceae) |
title_full | The complete chloroplast genome sequence of Spiraea blumei G. Don (Rosaceae) |
title_fullStr | The complete chloroplast genome sequence of Spiraea blumei G. Don (Rosaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Spiraea blumei G. Don (Rosaceae) |
title_short | The complete chloroplast genome sequence of Spiraea blumei G. Don (Rosaceae) |
title_sort | complete chloroplast genome sequence of spiraea blumei g. don (rosaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707486/ https://www.ncbi.nlm.nih.gov/pubmed/33366136 http://dx.doi.org/10.1080/23802359.2019.1678434 |
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