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The complete chloroplast genome of Dipterocarpus turbinatus Gaertn. F
Dipterocarpus turbinatus Gaertn. F., naturally distributes in Southern China, which is an elite natural tree with high economic and medicinal value. In study, all chloroplast (cp) genome of Dipterocarpus turbinatus Gaertn. F. was assembled and characterized based on Illumina pair-end sequencing data...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707500/ https://www.ncbi.nlm.nih.gov/pubmed/33366119 http://dx.doi.org/10.1080/23802359.2019.1677192 |
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author | Ci, Xiaotong Peng, Jinyu Shi, Chen Zhu, Zeli Cai, Nianhui Duan, Anan Wang, Dawei |
author_facet | Ci, Xiaotong Peng, Jinyu Shi, Chen Zhu, Zeli Cai, Nianhui Duan, Anan Wang, Dawei |
author_sort | Ci, Xiaotong |
collection | PubMed |
description | Dipterocarpus turbinatus Gaertn. F., naturally distributes in Southern China, which is an elite natural tree with high economic and medicinal value. In study, all chloroplast (cp) genome of Dipterocarpus turbinatus Gaertn. F. was assembled and characterized based on Illumina pair-end sequencing data. The complete chloroplast genome length was 152,279 bp. It contained a large (LSC, 83,862 bp) and a small (SSC, 20,215 bp) single copy region, separated by a pair of inverted repeats of 24,101 bp (IRs). The overall GC content of genome was 37.3%, the corresponding values of LSC, SSC, and IR regions were 35.3, 31.6, and 43.2%, respectively. There were 128 genes in the genome including 84 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. Among all genes, 14 genes contain a single intron and 1 gene has two introns. The result showed that Dipterocarpus turbinatus Gaertn. F. was closely related to Vatica mangachapoi. |
format | Online Article Text |
id | pubmed-7707500 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77075002020-12-22 The complete chloroplast genome of Dipterocarpus turbinatus Gaertn. F Ci, Xiaotong Peng, Jinyu Shi, Chen Zhu, Zeli Cai, Nianhui Duan, Anan Wang, Dawei Mitochondrial DNA B Resour Mitogenome Announcement Dipterocarpus turbinatus Gaertn. F., naturally distributes in Southern China, which is an elite natural tree with high economic and medicinal value. In study, all chloroplast (cp) genome of Dipterocarpus turbinatus Gaertn. F. was assembled and characterized based on Illumina pair-end sequencing data. The complete chloroplast genome length was 152,279 bp. It contained a large (LSC, 83,862 bp) and a small (SSC, 20,215 bp) single copy region, separated by a pair of inverted repeats of 24,101 bp (IRs). The overall GC content of genome was 37.3%, the corresponding values of LSC, SSC, and IR regions were 35.3, 31.6, and 43.2%, respectively. There were 128 genes in the genome including 84 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. Among all genes, 14 genes contain a single intron and 1 gene has two introns. The result showed that Dipterocarpus turbinatus Gaertn. F. was closely related to Vatica mangachapoi. Taylor & Francis 2019-10-18 /pmc/articles/PMC7707500/ /pubmed/33366119 http://dx.doi.org/10.1080/23802359.2019.1677192 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Ci, Xiaotong Peng, Jinyu Shi, Chen Zhu, Zeli Cai, Nianhui Duan, Anan Wang, Dawei The complete chloroplast genome of Dipterocarpus turbinatus Gaertn. F |
title | The complete chloroplast genome of Dipterocarpus turbinatus Gaertn. F |
title_full | The complete chloroplast genome of Dipterocarpus turbinatus Gaertn. F |
title_fullStr | The complete chloroplast genome of Dipterocarpus turbinatus Gaertn. F |
title_full_unstemmed | The complete chloroplast genome of Dipterocarpus turbinatus Gaertn. F |
title_short | The complete chloroplast genome of Dipterocarpus turbinatus Gaertn. F |
title_sort | complete chloroplast genome of dipterocarpus turbinatus gaertn. f |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707500/ https://www.ncbi.nlm.nih.gov/pubmed/33366119 http://dx.doi.org/10.1080/23802359.2019.1677192 |
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