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Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species

Hopea chinensis (Dipterocarpaceae) is a rare and critically endangered species. Here, we first report and characterize its complete chloroplast genome sequence based on Illumina paired-end sequencing data. The complete plastid genome was 152,054 bp, which contained inverted repeats (IR) of 21,702 bp...

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Detalles Bibliográficos
Autores principales: Shi, Yancai, Duan, Na, Liu, Bingbing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707529/
https://www.ncbi.nlm.nih.gov/pubmed/33366327
http://dx.doi.org/10.1080/23802359.2019.1681920
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author Shi, Yancai
Duan, Na
Liu, Bingbing
author_facet Shi, Yancai
Duan, Na
Liu, Bingbing
author_sort Shi, Yancai
collection PubMed
description Hopea chinensis (Dipterocarpaceae) is a rare and critically endangered species. Here, we first report and characterize its complete chloroplast genome sequence based on Illumina paired-end sequencing data. The complete plastid genome was 152,054 bp, which contained inverted repeats (IR) of 21,702 bp separated by a large single-copy (LSC) and a small single-copy (SSC) of 20,462 bp and 88,188 bp, respectively. The cpDNA contains 129 genes, comprising 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The overall GC content of the plastome is 37.4%. The phylogenetic analysis of 18 selected chloroplast genomes demonstrated that H. chinensis was close to the species Parashorea macrophylla.
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spelling pubmed-77075292020-12-22 Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species Shi, Yancai Duan, Na Liu, Bingbing Mitochondrial DNA B Resour Mitogenome Announcement Hopea chinensis (Dipterocarpaceae) is a rare and critically endangered species. Here, we first report and characterize its complete chloroplast genome sequence based on Illumina paired-end sequencing data. The complete plastid genome was 152,054 bp, which contained inverted repeats (IR) of 21,702 bp separated by a large single-copy (LSC) and a small single-copy (SSC) of 20,462 bp and 88,188 bp, respectively. The cpDNA contains 129 genes, comprising 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The overall GC content of the plastome is 37.4%. The phylogenetic analysis of 18 selected chloroplast genomes demonstrated that H. chinensis was close to the species Parashorea macrophylla. Taylor & Francis 2019-11-18 /pmc/articles/PMC7707529/ /pubmed/33366327 http://dx.doi.org/10.1080/23802359.2019.1681920 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Shi, Yancai
Duan, Na
Liu, Bingbing
Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species
title Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species
title_full Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species
title_fullStr Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species
title_full_unstemmed Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species
title_short Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species
title_sort complete chloroplast genome sequence of hopea chinensis (dipterocarpaceae), a rare and critically endangered species
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707529/
https://www.ncbi.nlm.nih.gov/pubmed/33366327
http://dx.doi.org/10.1080/23802359.2019.1681920
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