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Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species
Hopea chinensis (Dipterocarpaceae) is a rare and critically endangered species. Here, we first report and characterize its complete chloroplast genome sequence based on Illumina paired-end sequencing data. The complete plastid genome was 152,054 bp, which contained inverted repeats (IR) of 21,702 bp...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707529/ https://www.ncbi.nlm.nih.gov/pubmed/33366327 http://dx.doi.org/10.1080/23802359.2019.1681920 |
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author | Shi, Yancai Duan, Na Liu, Bingbing |
author_facet | Shi, Yancai Duan, Na Liu, Bingbing |
author_sort | Shi, Yancai |
collection | PubMed |
description | Hopea chinensis (Dipterocarpaceae) is a rare and critically endangered species. Here, we first report and characterize its complete chloroplast genome sequence based on Illumina paired-end sequencing data. The complete plastid genome was 152,054 bp, which contained inverted repeats (IR) of 21,702 bp separated by a large single-copy (LSC) and a small single-copy (SSC) of 20,462 bp and 88,188 bp, respectively. The cpDNA contains 129 genes, comprising 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The overall GC content of the plastome is 37.4%. The phylogenetic analysis of 18 selected chloroplast genomes demonstrated that H. chinensis was close to the species Parashorea macrophylla. |
format | Online Article Text |
id | pubmed-7707529 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77075292020-12-22 Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species Shi, Yancai Duan, Na Liu, Bingbing Mitochondrial DNA B Resour Mitogenome Announcement Hopea chinensis (Dipterocarpaceae) is a rare and critically endangered species. Here, we first report and characterize its complete chloroplast genome sequence based on Illumina paired-end sequencing data. The complete plastid genome was 152,054 bp, which contained inverted repeats (IR) of 21,702 bp separated by a large single-copy (LSC) and a small single-copy (SSC) of 20,462 bp and 88,188 bp, respectively. The cpDNA contains 129 genes, comprising 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The overall GC content of the plastome is 37.4%. The phylogenetic analysis of 18 selected chloroplast genomes demonstrated that H. chinensis was close to the species Parashorea macrophylla. Taylor & Francis 2019-11-18 /pmc/articles/PMC7707529/ /pubmed/33366327 http://dx.doi.org/10.1080/23802359.2019.1681920 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Shi, Yancai Duan, Na Liu, Bingbing Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species |
title | Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species |
title_full | Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species |
title_fullStr | Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species |
title_full_unstemmed | Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species |
title_short | Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species |
title_sort | complete chloroplast genome sequence of hopea chinensis (dipterocarpaceae), a rare and critically endangered species |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707529/ https://www.ncbi.nlm.nih.gov/pubmed/33366327 http://dx.doi.org/10.1080/23802359.2019.1681920 |
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