The complete chloroplast genome of Vitis amurensis Rupr., an economic plant to China

The chloroplast (cp) genome sequence of Vitis amurensis has been characterized from Illumina pair-end sequencing. The complete cp genome was 161,014 bp in length, containing a large single-copy region (LSC) of 89,239 bp and a small single-copy region (SSC) of 19,067 bp, which were separated by a pai...

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Autores principales: Xie, Jun, Guo, Xiaojing, Wang, Rong, Liu, Jing, Liu, Yujuan, Qiao, Gaixia, Xu, Meilong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707530/
https://www.ncbi.nlm.nih.gov/pubmed/33366142
http://dx.doi.org/10.1080/23802359.2019.1678431
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author Xie, Jun
Guo, Xiaojing
Wang, Rong
Liu, Jing
Liu, Yujuan
Qiao, Gaixia
Xu, Meilong
author_facet Xie, Jun
Guo, Xiaojing
Wang, Rong
Liu, Jing
Liu, Yujuan
Qiao, Gaixia
Xu, Meilong
author_sort Xie, Jun
collection PubMed
description The chloroplast (cp) genome sequence of Vitis amurensis has been characterized from Illumina pair-end sequencing. The complete cp genome was 161,014 bp in length, containing a large single-copy region (LSC) of 89,239 bp and a small single-copy region (SSC) of 19,067 bp, which were separated by a pair of 26,354 bp inverted repeat regions (IRs). The genome contained 133 genes, including 88 protein coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content is 37.4%, while the corresponding values of the LSC, SSC, and IR regions are 35.3%, 31.7%, and 43.0%, respectively. Further, phylogenetic analysis suggested that the V. amurensis was sister to Vitis coignetiae.
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spelling pubmed-77075302020-12-22 The complete chloroplast genome of Vitis amurensis Rupr., an economic plant to China Xie, Jun Guo, Xiaojing Wang, Rong Liu, Jing Liu, Yujuan Qiao, Gaixia Xu, Meilong Mitochondrial DNA B Resour Mitogenome Announcement The chloroplast (cp) genome sequence of Vitis amurensis has been characterized from Illumina pair-end sequencing. The complete cp genome was 161,014 bp in length, containing a large single-copy region (LSC) of 89,239 bp and a small single-copy region (SSC) of 19,067 bp, which were separated by a pair of 26,354 bp inverted repeat regions (IRs). The genome contained 133 genes, including 88 protein coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content is 37.4%, while the corresponding values of the LSC, SSC, and IR regions are 35.3%, 31.7%, and 43.0%, respectively. Further, phylogenetic analysis suggested that the V. amurensis was sister to Vitis coignetiae. Taylor & Francis 2019-10-21 /pmc/articles/PMC7707530/ /pubmed/33366142 http://dx.doi.org/10.1080/23802359.2019.1678431 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Xie, Jun
Guo, Xiaojing
Wang, Rong
Liu, Jing
Liu, Yujuan
Qiao, Gaixia
Xu, Meilong
The complete chloroplast genome of Vitis amurensis Rupr., an economic plant to China
title The complete chloroplast genome of Vitis amurensis Rupr., an economic plant to China
title_full The complete chloroplast genome of Vitis amurensis Rupr., an economic plant to China
title_fullStr The complete chloroplast genome of Vitis amurensis Rupr., an economic plant to China
title_full_unstemmed The complete chloroplast genome of Vitis amurensis Rupr., an economic plant to China
title_short The complete chloroplast genome of Vitis amurensis Rupr., an economic plant to China
title_sort complete chloroplast genome of vitis amurensis rupr., an economic plant to china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707530/
https://www.ncbi.nlm.nih.gov/pubmed/33366142
http://dx.doi.org/10.1080/23802359.2019.1678431
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