The complete plastid genome of Chinese cinnamon, Cinnamomum aromaticum Nees (Lauraceae)

Cinnamomum aromaticum has long been recognized and cultivated in tropical and subtropical Asia for their aromatic bark to produce cinnamon. We reported for the first time the complete plastid genome of C. aromaticum and reconstructed its phylogenetic position. The complete plastid genome is 152,754 ...

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Detalles Bibliográficos
Autores principales: Xie, Peiwu, Lin, Shanzhi, Lai, Qiang, Lian, Huiming, Chen, Jielian, Zhang, Qian, He, Boxiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707532/
https://www.ncbi.nlm.nih.gov/pubmed/33366208
http://dx.doi.org/10.1080/23802359.2019.1685414
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author Xie, Peiwu
Lin, Shanzhi
Lai, Qiang
Lian, Huiming
Chen, Jielian
Zhang, Qian
He, Boxiang
author_facet Xie, Peiwu
Lin, Shanzhi
Lai, Qiang
Lian, Huiming
Chen, Jielian
Zhang, Qian
He, Boxiang
author_sort Xie, Peiwu
collection PubMed
description Cinnamomum aromaticum has long been recognized and cultivated in tropical and subtropical Asia for their aromatic bark to produce cinnamon. We reported for the first time the complete plastid genome of C. aromaticum and reconstructed its phylogenetic position. The complete plastid genome is 152,754 bp in length with a quadripartite organization: a large single copy (LSC) region of 93,706 bp and a small single copy (SSC) region of 18,916 bp. Each of the two inverted repeat regions (IRa and IRb) is 20,066 bp. We recovered 128 functional genes, including 84 protein-coding genes, 36 tRNA genes and 8 rRNA genes. The phylogenetic analysis suggested that C. aromaticum and two samples of C. camphora forms a strongly supported clade, which is sister to another cinnamon species of C. verum native to Sri Lanka with strong ultrafast bootstrap support.
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spelling pubmed-77075322020-12-22 The complete plastid genome of Chinese cinnamon, Cinnamomum aromaticum Nees (Lauraceae) Xie, Peiwu Lin, Shanzhi Lai, Qiang Lian, Huiming Chen, Jielian Zhang, Qian He, Boxiang Mitochondrial DNA B Resour Mitogenome Announcement Cinnamomum aromaticum has long been recognized and cultivated in tropical and subtropical Asia for their aromatic bark to produce cinnamon. We reported for the first time the complete plastid genome of C. aromaticum and reconstructed its phylogenetic position. The complete plastid genome is 152,754 bp in length with a quadripartite organization: a large single copy (LSC) region of 93,706 bp and a small single copy (SSC) region of 18,916 bp. Each of the two inverted repeat regions (IRa and IRb) is 20,066 bp. We recovered 128 functional genes, including 84 protein-coding genes, 36 tRNA genes and 8 rRNA genes. The phylogenetic analysis suggested that C. aromaticum and two samples of C. camphora forms a strongly supported clade, which is sister to another cinnamon species of C. verum native to Sri Lanka with strong ultrafast bootstrap support. Taylor & Francis 2019-11-05 /pmc/articles/PMC7707532/ /pubmed/33366208 http://dx.doi.org/10.1080/23802359.2019.1685414 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Xie, Peiwu
Lin, Shanzhi
Lai, Qiang
Lian, Huiming
Chen, Jielian
Zhang, Qian
He, Boxiang
The complete plastid genome of Chinese cinnamon, Cinnamomum aromaticum Nees (Lauraceae)
title The complete plastid genome of Chinese cinnamon, Cinnamomum aromaticum Nees (Lauraceae)
title_full The complete plastid genome of Chinese cinnamon, Cinnamomum aromaticum Nees (Lauraceae)
title_fullStr The complete plastid genome of Chinese cinnamon, Cinnamomum aromaticum Nees (Lauraceae)
title_full_unstemmed The complete plastid genome of Chinese cinnamon, Cinnamomum aromaticum Nees (Lauraceae)
title_short The complete plastid genome of Chinese cinnamon, Cinnamomum aromaticum Nees (Lauraceae)
title_sort complete plastid genome of chinese cinnamon, cinnamomum aromaticum nees (lauraceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707532/
https://www.ncbi.nlm.nih.gov/pubmed/33366208
http://dx.doi.org/10.1080/23802359.2019.1685414
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