The complete chloroplast genome of Prunus mira koehne (Prunoideae, Rosaceae), a wild and indigenous peach on Tibet, China

Prunus mira Koehne belonging to family Rosaceae, is an indigenous species distributed in Tibet, China. De novo assembly with low coverage whole genome sequencing data facilitated to generate the complete chloroplast (cp) genome of P. mira in this study. The genome was a circular DNA molecule with 15...

Descripción completa

Detalles Bibliográficos
Autores principales: Bao, Wenquan, Ao, Dun, Wuyun, Tana, Li, Tiezhu, Wang, Lin, Liu, Huimin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707581/
https://www.ncbi.nlm.nih.gov/pubmed/33366164
http://dx.doi.org/10.1080/23802359.2019.1679048
_version_ 1783617380701700096
author Bao, Wenquan
Ao, Dun
Wuyun, Tana
Li, Tiezhu
Wang, Lin
Liu, Huimin
author_facet Bao, Wenquan
Ao, Dun
Wuyun, Tana
Li, Tiezhu
Wang, Lin
Liu, Huimin
author_sort Bao, Wenquan
collection PubMed
description Prunus mira Koehne belonging to family Rosaceae, is an indigenous species distributed in Tibet, China. De novo assembly with low coverage whole genome sequencing data facilitated to generate the complete chloroplast (cp) genome of P. mira in this study. The genome was a circular DNA molecule with 158,153 bp in length. It exhibited a typical quadripartite structure comprising a large single-copy region (LSC, 86,319 bp), a small single-copy region (SSC, 19,022 bp) and a pair of inverted repeat regions (IRs, 26,406 bp each). A total of 112 genes were predicted, which included 78 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. Phylogenetic analysis indicated that P. mira was the most ancestral and basal lineage within the subgenus Amygdalus (Prunoideae subfamily), which is conform to the traditional classification.
format Online
Article
Text
id pubmed-7707581
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77075812020-12-22 The complete chloroplast genome of Prunus mira koehne (Prunoideae, Rosaceae), a wild and indigenous peach on Tibet, China Bao, Wenquan Ao, Dun Wuyun, Tana Li, Tiezhu Wang, Lin Liu, Huimin Mitochondrial DNA B Resour Mitogenome Announcement Prunus mira Koehne belonging to family Rosaceae, is an indigenous species distributed in Tibet, China. De novo assembly with low coverage whole genome sequencing data facilitated to generate the complete chloroplast (cp) genome of P. mira in this study. The genome was a circular DNA molecule with 158,153 bp in length. It exhibited a typical quadripartite structure comprising a large single-copy region (LSC, 86,319 bp), a small single-copy region (SSC, 19,022 bp) and a pair of inverted repeat regions (IRs, 26,406 bp each). A total of 112 genes were predicted, which included 78 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. Phylogenetic analysis indicated that P. mira was the most ancestral and basal lineage within the subgenus Amygdalus (Prunoideae subfamily), which is conform to the traditional classification. Taylor & Francis 2019-10-24 /pmc/articles/PMC7707581/ /pubmed/33366164 http://dx.doi.org/10.1080/23802359.2019.1679048 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Bao, Wenquan
Ao, Dun
Wuyun, Tana
Li, Tiezhu
Wang, Lin
Liu, Huimin
The complete chloroplast genome of Prunus mira koehne (Prunoideae, Rosaceae), a wild and indigenous peach on Tibet, China
title The complete chloroplast genome of Prunus mira koehne (Prunoideae, Rosaceae), a wild and indigenous peach on Tibet, China
title_full The complete chloroplast genome of Prunus mira koehne (Prunoideae, Rosaceae), a wild and indigenous peach on Tibet, China
title_fullStr The complete chloroplast genome of Prunus mira koehne (Prunoideae, Rosaceae), a wild and indigenous peach on Tibet, China
title_full_unstemmed The complete chloroplast genome of Prunus mira koehne (Prunoideae, Rosaceae), a wild and indigenous peach on Tibet, China
title_short The complete chloroplast genome of Prunus mira koehne (Prunoideae, Rosaceae), a wild and indigenous peach on Tibet, China
title_sort complete chloroplast genome of prunus mira koehne (prunoideae, rosaceae), a wild and indigenous peach on tibet, china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707581/
https://www.ncbi.nlm.nih.gov/pubmed/33366164
http://dx.doi.org/10.1080/23802359.2019.1679048
work_keys_str_mv AT baowenquan thecompletechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina
AT aodun thecompletechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina
AT wuyuntana thecompletechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina
AT litiezhu thecompletechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina
AT wanglin thecompletechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina
AT liuhuimin thecompletechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina
AT baowenquan completechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina
AT aodun completechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina
AT wuyuntana completechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina
AT litiezhu completechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina
AT wanglin completechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina
AT liuhuimin completechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina

Ejemplares similares