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Characterization of complete chloroplast genome of traditional Chinese medical plants Paris Mairei and its phylogenetic positions

The genus Paris (Liliaceae) has been used for traditional medicine in China. The wild Paris was on the verge of exhaustion due to illegal and immoderate exploitation coupled with environmental pollution. In order to alleviate resource pressure, Paris mairei can be considered as alternative sources....

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Autores principales: Song, Yun, Xu, Jin, Zhang, Yongjiang, Li, MingFu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707587/
https://www.ncbi.nlm.nih.gov/pubmed/33366204
http://dx.doi.org/10.1080/23802359.2019.1681317
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author Song, Yun
Xu, Jin
Zhang, Yongjiang
Li, MingFu
author_facet Song, Yun
Xu, Jin
Zhang, Yongjiang
Li, MingFu
author_sort Song, Yun
collection PubMed
description The genus Paris (Liliaceae) has been used for traditional medicine in China. The wild Paris was on the verge of exhaustion due to illegal and immoderate exploitation coupled with environmental pollution. In order to alleviate resource pressure, Paris mairei can be considered as alternative sources. Here, we report the complete chloroplast genome of Paris mairei. The genome is 162,736 bp in length including a small single-copy region (SSC, 12,908 bp) and a large single-copy region (LSC, 84,286 bp) separated by a pair of inverted repeats (IRs; 32,771 bp). The genome contained 113 genes, including 79 protein-coding genes, 4 ribosomal RNA genes, and 30 tRNA genes. Among these genes, 16 harboured a single intron, and 2 contained a couple of introns. The overall G + C content of the cpDNA is 37.1%, while the corresponding values of the LSC, SSC, and IR regions are 35.7, 32.1, and 39.9%, respectively. The complete chloroplast genome sequence of Paris mairei will provide a useful resource for the conservation genetics of this species as well as for the phylogenetic studies for the genus Paris.
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spelling pubmed-77075872020-12-22 Characterization of complete chloroplast genome of traditional Chinese medical plants Paris Mairei and its phylogenetic positions Song, Yun Xu, Jin Zhang, Yongjiang Li, MingFu Mitochondrial DNA B Resour Mitogenome Announcement The genus Paris (Liliaceae) has been used for traditional medicine in China. The wild Paris was on the verge of exhaustion due to illegal and immoderate exploitation coupled with environmental pollution. In order to alleviate resource pressure, Paris mairei can be considered as alternative sources. Here, we report the complete chloroplast genome of Paris mairei. The genome is 162,736 bp in length including a small single-copy region (SSC, 12,908 bp) and a large single-copy region (LSC, 84,286 bp) separated by a pair of inverted repeats (IRs; 32,771 bp). The genome contained 113 genes, including 79 protein-coding genes, 4 ribosomal RNA genes, and 30 tRNA genes. Among these genes, 16 harboured a single intron, and 2 contained a couple of introns. The overall G + C content of the cpDNA is 37.1%, while the corresponding values of the LSC, SSC, and IR regions are 35.7, 32.1, and 39.9%, respectively. The complete chloroplast genome sequence of Paris mairei will provide a useful resource for the conservation genetics of this species as well as for the phylogenetic studies for the genus Paris. Taylor & Francis 2019-10-30 /pmc/articles/PMC7707587/ /pubmed/33366204 http://dx.doi.org/10.1080/23802359.2019.1681317 Text en © 2019 Chinese Academy of Inspection and Quarantine. Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Song, Yun
Xu, Jin
Zhang, Yongjiang
Li, MingFu
Characterization of complete chloroplast genome of traditional Chinese medical plants Paris Mairei and its phylogenetic positions
title Characterization of complete chloroplast genome of traditional Chinese medical plants Paris Mairei and its phylogenetic positions
title_full Characterization of complete chloroplast genome of traditional Chinese medical plants Paris Mairei and its phylogenetic positions
title_fullStr Characterization of complete chloroplast genome of traditional Chinese medical plants Paris Mairei and its phylogenetic positions
title_full_unstemmed Characterization of complete chloroplast genome of traditional Chinese medical plants Paris Mairei and its phylogenetic positions
title_short Characterization of complete chloroplast genome of traditional Chinese medical plants Paris Mairei and its phylogenetic positions
title_sort characterization of complete chloroplast genome of traditional chinese medical plants paris mairei and its phylogenetic positions
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707587/
https://www.ncbi.nlm.nih.gov/pubmed/33366204
http://dx.doi.org/10.1080/23802359.2019.1681317
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