Assembly and phylogenetic analysis of the complete chloroplast genome sequence of Actinidia setosa

The complete chloroplast (cp) genome sequence of Actinidia setosa (A. setosa) was sequenced and assembled into a circular genome of 156,728 bp length using Illumina paired-end data. The cp genome composed of a pair of 24,090 bp inverted repeat (IR) regions separated by a large single copy region (LS...

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Autores principales: Lin, Haifeng, Jiang, Ling, Zhang, Fuquan, Bai, Di
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707611/
https://www.ncbi.nlm.nih.gov/pubmed/33366140
http://dx.doi.org/10.1080/23802359.2019.1678423
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author Lin, Haifeng
Jiang, Ling
Zhang, Fuquan
Bai, Di
author_facet Lin, Haifeng
Jiang, Ling
Zhang, Fuquan
Bai, Di
author_sort Lin, Haifeng
collection PubMed
description The complete chloroplast (cp) genome sequence of Actinidia setosa (A. setosa) was sequenced and assembled into a circular genome of 156,728 bp length using Illumina paired-end data. The cp genome composed of a pair of 24,090 bp inverted repeat (IR) regions separated by a large single copy region (LSC) of 88,256 bp and a small single copy region (SSC) of 20,292 bp. Additionally, a total of 131 genes, including 85 protein-coding genes, 38 tRNA genes and 8 rRNA genes, were identified in the A. setosa cp genome. Phylogenetic analysis showed that A. setosa was evolutionarily close to other two kiwifruits A. deliciosa and A. chinensis.
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spelling pubmed-77076112020-12-22 Assembly and phylogenetic analysis of the complete chloroplast genome sequence of Actinidia setosa Lin, Haifeng Jiang, Ling Zhang, Fuquan Bai, Di Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast (cp) genome sequence of Actinidia setosa (A. setosa) was sequenced and assembled into a circular genome of 156,728 bp length using Illumina paired-end data. The cp genome composed of a pair of 24,090 bp inverted repeat (IR) regions separated by a large single copy region (LSC) of 88,256 bp and a small single copy region (SSC) of 20,292 bp. Additionally, a total of 131 genes, including 85 protein-coding genes, 38 tRNA genes and 8 rRNA genes, were identified in the A. setosa cp genome. Phylogenetic analysis showed that A. setosa was evolutionarily close to other two kiwifruits A. deliciosa and A. chinensis. Taylor & Francis 2019-10-21 /pmc/articles/PMC7707611/ /pubmed/33366140 http://dx.doi.org/10.1080/23802359.2019.1678423 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Lin, Haifeng
Jiang, Ling
Zhang, Fuquan
Bai, Di
Assembly and phylogenetic analysis of the complete chloroplast genome sequence of Actinidia setosa
title Assembly and phylogenetic analysis of the complete chloroplast genome sequence of Actinidia setosa
title_full Assembly and phylogenetic analysis of the complete chloroplast genome sequence of Actinidia setosa
title_fullStr Assembly and phylogenetic analysis of the complete chloroplast genome sequence of Actinidia setosa
title_full_unstemmed Assembly and phylogenetic analysis of the complete chloroplast genome sequence of Actinidia setosa
title_short Assembly and phylogenetic analysis of the complete chloroplast genome sequence of Actinidia setosa
title_sort assembly and phylogenetic analysis of the complete chloroplast genome sequence of actinidia setosa
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707611/
https://www.ncbi.nlm.nih.gov/pubmed/33366140
http://dx.doi.org/10.1080/23802359.2019.1678423
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AT zhangfuquan assemblyandphylogeneticanalysisofthecompletechloroplastgenomesequenceofactinidiasetosa
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