The complete chloroplast genome sequence of Paphiopedilum purpuratum (Orchidaceae)

Paphiopedilum purpuratum, an endangered terrestrial orchid distributed in southwestern and south of China. In this study, the complete chloroplast genome (cpDNA) sequence of P. purpuratum was determined from Illumina pair-end sequencing data. With a total length of 158,459 bp in length and includes...

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Autores principales: Chen, Xian-De, Peng, Dong-Hui, Lan, Si-Ren, Chen, Jun, Fu, Wen-Qun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707658/
https://www.ncbi.nlm.nih.gov/pubmed/33366247
http://dx.doi.org/10.1080/23802359.2019.1688106
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author Chen, Xian-De
Peng, Dong-Hui
Lan, Si-Ren
Chen, Jun
Fu, Wen-Qun
author_facet Chen, Xian-De
Peng, Dong-Hui
Lan, Si-Ren
Chen, Jun
Fu, Wen-Qun
author_sort Chen, Xian-De
collection PubMed
description Paphiopedilum purpuratum, an endangered terrestrial orchid distributed in southwestern and south of China. In this study, the complete chloroplast genome (cpDNA) sequence of P. purpuratum was determined from Illumina pair-end sequencing data. With a total length of 158,459 bp in length and includes two inverted repeat regions (IRs) of 34,484 bp each, which were separated by a large single-copy region (LSC) 88,022 bp and a small single-copy region (SSC) 1,469 bp. The chloroplast genome contained 126 genes, including 74 protein conding genes,38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis indicated that P. purpuratum, P. dianthum, P. niveum, P. delenatii, and P. armeniacum cluster together, placed them within genus Paphiopedilum. The complete chloroplast genome sequence of P. purpuratum will provide a useful resource for the evolutionary biology study of phylogenetic studies in Orchidaceae.
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spelling pubmed-77076582020-12-22 The complete chloroplast genome sequence of Paphiopedilum purpuratum (Orchidaceae) Chen, Xian-De Peng, Dong-Hui Lan, Si-Ren Chen, Jun Fu, Wen-Qun Mitochondrial DNA B Resour Mitogenome Announcement Paphiopedilum purpuratum, an endangered terrestrial orchid distributed in southwestern and south of China. In this study, the complete chloroplast genome (cpDNA) sequence of P. purpuratum was determined from Illumina pair-end sequencing data. With a total length of 158,459 bp in length and includes two inverted repeat regions (IRs) of 34,484 bp each, which were separated by a large single-copy region (LSC) 88,022 bp and a small single-copy region (SSC) 1,469 bp. The chloroplast genome contained 126 genes, including 74 protein conding genes,38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis indicated that P. purpuratum, P. dianthum, P. niveum, P. delenatii, and P. armeniacum cluster together, placed them within genus Paphiopedilum. The complete chloroplast genome sequence of P. purpuratum will provide a useful resource for the evolutionary biology study of phylogenetic studies in Orchidaceae. Taylor & Francis 2019-11-08 /pmc/articles/PMC7707658/ /pubmed/33366247 http://dx.doi.org/10.1080/23802359.2019.1688106 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Chen, Xian-De
Peng, Dong-Hui
Lan, Si-Ren
Chen, Jun
Fu, Wen-Qun
The complete chloroplast genome sequence of Paphiopedilum purpuratum (Orchidaceae)
title The complete chloroplast genome sequence of Paphiopedilum purpuratum (Orchidaceae)
title_full The complete chloroplast genome sequence of Paphiopedilum purpuratum (Orchidaceae)
title_fullStr The complete chloroplast genome sequence of Paphiopedilum purpuratum (Orchidaceae)
title_full_unstemmed The complete chloroplast genome sequence of Paphiopedilum purpuratum (Orchidaceae)
title_short The complete chloroplast genome sequence of Paphiopedilum purpuratum (Orchidaceae)
title_sort complete chloroplast genome sequence of paphiopedilum purpuratum (orchidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707658/
https://www.ncbi.nlm.nih.gov/pubmed/33366247
http://dx.doi.org/10.1080/23802359.2019.1688106
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