Cargando…
Genetic and phylogenetic relationships analysis of the complete chloroplast genome Cucumis sativus to China
Cucumber, Cucumis sativus is one of the most cultivated vegetables in the world, which is mostly consumed raw in China. The complete chloroplast genome of C. sativus was assembled and annotated in this study. Its size was 155,525 bp, containing a large single-copy region of 86,878 bp, a small single...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707661/ https://www.ncbi.nlm.nih.gov/pubmed/33366242 http://dx.doi.org/10.1080/23802359.2019.1687040 |
_version_ | 1783617398778101760 |
---|---|
author | Xiao, Wei Wang, Xuanyao Bie, Mei |
author_facet | Xiao, Wei Wang, Xuanyao Bie, Mei |
author_sort | Xiao, Wei |
collection | PubMed |
description | Cucumber, Cucumis sativus is one of the most cultivated vegetables in the world, which is mostly consumed raw in China. The complete chloroplast genome of C. sativus was assembled and annotated in this study. Its size was 155,525 bp, containing a large single-copy region of 86,878 bp, a small single-copy region of 18,269 bp and a pair of IR regions of 25,189 bp. Whole chloroplast genome of C. sativus contains 131 genes, including 77 protein-coding genes (PCGs), 46 transfer RNA genes (tRNAs), and 8 ribosome RNA genes (rRNAs). The overall nucleotide composition is: A of 31.1%, T of 31.9%, C of 18.8% and G of 18.2%, with a total GC content of the chloroplast genome 37.0% and AT of 63.0%. Genetic and phylogenetic analysis based on 10 plants species confirmed the position of C. sativus closely related to Cucurbitaceae species of Cucumis hystrix. |
format | Online Article Text |
id | pubmed-7707661 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77076612020-12-22 Genetic and phylogenetic relationships analysis of the complete chloroplast genome Cucumis sativus to China Xiao, Wei Wang, Xuanyao Bie, Mei Mitochondrial DNA B Resour Mitogenome Announcement Cucumber, Cucumis sativus is one of the most cultivated vegetables in the world, which is mostly consumed raw in China. The complete chloroplast genome of C. sativus was assembled and annotated in this study. Its size was 155,525 bp, containing a large single-copy region of 86,878 bp, a small single-copy region of 18,269 bp and a pair of IR regions of 25,189 bp. Whole chloroplast genome of C. sativus contains 131 genes, including 77 protein-coding genes (PCGs), 46 transfer RNA genes (tRNAs), and 8 ribosome RNA genes (rRNAs). The overall nucleotide composition is: A of 31.1%, T of 31.9%, C of 18.8% and G of 18.2%, with a total GC content of the chloroplast genome 37.0% and AT of 63.0%. Genetic and phylogenetic analysis based on 10 plants species confirmed the position of C. sativus closely related to Cucurbitaceae species of Cucumis hystrix. Taylor & Francis 2019-11-08 /pmc/articles/PMC7707661/ /pubmed/33366242 http://dx.doi.org/10.1080/23802359.2019.1687040 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Xiao, Wei Wang, Xuanyao Bie, Mei Genetic and phylogenetic relationships analysis of the complete chloroplast genome Cucumis sativus to China |
title | Genetic and phylogenetic relationships analysis of the complete chloroplast genome Cucumis sativus to China |
title_full | Genetic and phylogenetic relationships analysis of the complete chloroplast genome Cucumis sativus to China |
title_fullStr | Genetic and phylogenetic relationships analysis of the complete chloroplast genome Cucumis sativus to China |
title_full_unstemmed | Genetic and phylogenetic relationships analysis of the complete chloroplast genome Cucumis sativus to China |
title_short | Genetic and phylogenetic relationships analysis of the complete chloroplast genome Cucumis sativus to China |
title_sort | genetic and phylogenetic relationships analysis of the complete chloroplast genome cucumis sativus to china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707661/ https://www.ncbi.nlm.nih.gov/pubmed/33366242 http://dx.doi.org/10.1080/23802359.2019.1687040 |
work_keys_str_mv | AT xiaowei geneticandphylogeneticrelationshipsanalysisofthecompletechloroplastgenomecucumissativustochina AT wangxuanyao geneticandphylogeneticrelationshipsanalysisofthecompletechloroplastgenomecucumissativustochina AT biemei geneticandphylogeneticrelationshipsanalysisofthecompletechloroplastgenomecucumissativustochina |