Characterization of the chloroplast genome of Cassia siamea Lain, a rosewood species from southeast China

Cassia siamea is a rosewood species in Southwest China with high wood and medicinal value. To clarify genetic background of C. siamea, we sequenced chloroplast genome by Illumina Hiseq and PacBio Sequel. The whole genome was 148,437 bp in length, containing a large single copy region (77,723 bp), a...

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Autores principales: Hong, Zhou, Zhao, Kun-Kun, Zhang, Ning-Nan, Yang, Zeng-Jiang, Liu, Xiao-Jin, Xu, Da-Ping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707669/
https://www.ncbi.nlm.nih.gov/pubmed/33366347
http://dx.doi.org/10.1080/23802359.2019.1692717
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author Hong, Zhou
Zhao, Kun-Kun
Zhang, Ning-Nan
Yang, Zeng-Jiang
Liu, Xiao-Jin
Xu, Da-Ping
author_facet Hong, Zhou
Zhao, Kun-Kun
Zhang, Ning-Nan
Yang, Zeng-Jiang
Liu, Xiao-Jin
Xu, Da-Ping
author_sort Hong, Zhou
collection PubMed
description Cassia siamea is a rosewood species in Southwest China with high wood and medicinal value. To clarify genetic background of C. siamea, we sequenced chloroplast genome by Illumina Hiseq and PacBio Sequel. The whole genome was 148,437 bp in length, containing a large single copy region (77,723 bp), a small single copy region (18,462 bp) and a pair of inverted repeats regions (26,126 bp). The cp genome contained 102 genes (71 protein-coding genes, 27 tRNAs and 4 rRNAs). The phylogenetic analysis indicated that C. siamea is close to Senna tora within Cassiinae/Caesalpiniaceae. The complete chloroplast genome of C. siamea will provide useful resources for the development and utilization of this species and the phylogenetic study of Fabaceae.
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spelling pubmed-77076692020-12-22 Characterization of the chloroplast genome of Cassia siamea Lain, a rosewood species from southeast China Hong, Zhou Zhao, Kun-Kun Zhang, Ning-Nan Yang, Zeng-Jiang Liu, Xiao-Jin Xu, Da-Ping Mitochondrial DNA B Resour Mitogenome Announcement Cassia siamea is a rosewood species in Southwest China with high wood and medicinal value. To clarify genetic background of C. siamea, we sequenced chloroplast genome by Illumina Hiseq and PacBio Sequel. The whole genome was 148,437 bp in length, containing a large single copy region (77,723 bp), a small single copy region (18,462 bp) and a pair of inverted repeats regions (26,126 bp). The cp genome contained 102 genes (71 protein-coding genes, 27 tRNAs and 4 rRNAs). The phylogenetic analysis indicated that C. siamea is close to Senna tora within Cassiinae/Caesalpiniaceae. The complete chloroplast genome of C. siamea will provide useful resources for the development and utilization of this species and the phylogenetic study of Fabaceae. Taylor & Francis 2019-11-20 /pmc/articles/PMC7707669/ /pubmed/33366347 http://dx.doi.org/10.1080/23802359.2019.1692717 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Hong, Zhou
Zhao, Kun-Kun
Zhang, Ning-Nan
Yang, Zeng-Jiang
Liu, Xiao-Jin
Xu, Da-Ping
Characterization of the chloroplast genome of Cassia siamea Lain, a rosewood species from southeast China
title Characterization of the chloroplast genome of Cassia siamea Lain, a rosewood species from southeast China
title_full Characterization of the chloroplast genome of Cassia siamea Lain, a rosewood species from southeast China
title_fullStr Characterization of the chloroplast genome of Cassia siamea Lain, a rosewood species from southeast China
title_full_unstemmed Characterization of the chloroplast genome of Cassia siamea Lain, a rosewood species from southeast China
title_short Characterization of the chloroplast genome of Cassia siamea Lain, a rosewood species from southeast China
title_sort characterization of the chloroplast genome of cassia siamea lain, a rosewood species from southeast china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707669/
https://www.ncbi.nlm.nih.gov/pubmed/33366347
http://dx.doi.org/10.1080/23802359.2019.1692717
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