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Complete chloroplast genome sequence of the wild diploid potato relative, Solanum brevicaule
Solanum brevicaule is a wild tuber-bearing species belonging to Solanaceae family. The complete chloroplast genome of S. brevicaule was constituted by de novo assembly using a small amount of whole genome sequencing data. The chloroplast genome of S. brevicaule was the circular DNA molecule with a l...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707683/ https://www.ncbi.nlm.nih.gov/pubmed/33366362 http://dx.doi.org/10.1080/23802359.2019.1693292 |
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author | Park, Tae-Ho |
author_facet | Park, Tae-Ho |
author_sort | Park, Tae-Ho |
collection | PubMed |
description | Solanum brevicaule is a wild tuber-bearing species belonging to Solanaceae family. The complete chloroplast genome of S. brevicaule was constituted by de novo assembly using a small amount of whole genome sequencing data. The chloroplast genome of S. brevicaule was the circular DNA molecule with a length of 155,531 bp and consisted of 85,981 bp of large single copy, 18,352 bp of small single copy, and 25,599 bp of a pair of inverted repeat regions. A total of 158 genes were annotated including 105 protein-coding genes, 45 tRNA genes and eight rRNA genes. Maximum likelihood phylogenetic analysis with 30 Solanaceae species revealed that S. brevicaule is grouped with other Solanum species including S. tuberosum. |
format | Online Article Text |
id | pubmed-7707683 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77076832020-12-22 Complete chloroplast genome sequence of the wild diploid potato relative, Solanum brevicaule Park, Tae-Ho Mitochondrial DNA B Resour Mitogenome Announcement Solanum brevicaule is a wild tuber-bearing species belonging to Solanaceae family. The complete chloroplast genome of S. brevicaule was constituted by de novo assembly using a small amount of whole genome sequencing data. The chloroplast genome of S. brevicaule was the circular DNA molecule with a length of 155,531 bp and consisted of 85,981 bp of large single copy, 18,352 bp of small single copy, and 25,599 bp of a pair of inverted repeat regions. A total of 158 genes were annotated including 105 protein-coding genes, 45 tRNA genes and eight rRNA genes. Maximum likelihood phylogenetic analysis with 30 Solanaceae species revealed that S. brevicaule is grouped with other Solanum species including S. tuberosum. Taylor & Francis 2019-11-20 /pmc/articles/PMC7707683/ /pubmed/33366362 http://dx.doi.org/10.1080/23802359.2019.1693292 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Park, Tae-Ho Complete chloroplast genome sequence of the wild diploid potato relative, Solanum brevicaule |
title | Complete chloroplast genome sequence of the wild diploid potato relative, Solanum brevicaule |
title_full | Complete chloroplast genome sequence of the wild diploid potato relative, Solanum brevicaule |
title_fullStr | Complete chloroplast genome sequence of the wild diploid potato relative, Solanum brevicaule |
title_full_unstemmed | Complete chloroplast genome sequence of the wild diploid potato relative, Solanum brevicaule |
title_short | Complete chloroplast genome sequence of the wild diploid potato relative, Solanum brevicaule |
title_sort | complete chloroplast genome sequence of the wild diploid potato relative, solanum brevicaule |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707683/ https://www.ncbi.nlm.nih.gov/pubmed/33366362 http://dx.doi.org/10.1080/23802359.2019.1693292 |
work_keys_str_mv | AT parktaeho completechloroplastgenomesequenceofthewilddiploidpotatorelativesolanumbrevicaule |