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Characterization of the chloroplast genome of the family Lauraceae plant species, Cinnamomum cassia

The fruit of Cinnamomum cassia is an important spice material and its branch is a common Chinese herbal medicine as the family Lauraceae. In this study, we reported the complete chloroplast genome of C. cassia. The chloroplast genome of C. cassia with length of 152,675 bp is a characteristic quadrip...

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Autores principales: Song, Kai, He, Man, Yu, Jingbo, Guan, Yanjun, Bai, Yumeng, Xin, Shuquan, Cao, Tianyi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707686/
https://www.ncbi.nlm.nih.gov/pubmed/33366245
http://dx.doi.org/10.1080/23802359.2019.1687360
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author Song, Kai
He, Man
Yu, Jingbo
Guan, Yanjun
Bai, Yumeng
Xin, Shuquan
Cao, Tianyi
author_facet Song, Kai
He, Man
Yu, Jingbo
Guan, Yanjun
Bai, Yumeng
Xin, Shuquan
Cao, Tianyi
author_sort Song, Kai
collection PubMed
description The fruit of Cinnamomum cassia is an important spice material and its branch is a common Chinese herbal medicine as the family Lauraceae. In this study, we reported the complete chloroplast genome of C. cassia. The chloroplast genome of C. cassia with length of 152,675 bp is a characteristic quadripartite structure. The length of the inverted-repeats regions (IRs), large single-copy (LSC) region, and small single-copy (SSC) region of C. cassia was 20,068 bp, 93,663 and 18,876 bp. The chloroplast genome of C. cassia contains 124 genes, which includes 80 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs) and 8 ribosomal RNA genes (rRNAs). The overall nucleotide content of the chloroplast genome: 30.0% A (Adenine), 30.8% T (Thymine), 19.7% C (Cytosine), 19.5% G (Guanine), and 39.2% GC content. Evolutionary relationship result showed that Cinnamomum cassia was most closely related to Cinnamomum parthenoxylon in the family Lauraceae by the Neighbor-Joining (NJ) method.
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spelling pubmed-77076862020-12-22 Characterization of the chloroplast genome of the family Lauraceae plant species, Cinnamomum cassia Song, Kai He, Man Yu, Jingbo Guan, Yanjun Bai, Yumeng Xin, Shuquan Cao, Tianyi Mitochondrial DNA B Resour Mitogenome Announcement The fruit of Cinnamomum cassia is an important spice material and its branch is a common Chinese herbal medicine as the family Lauraceae. In this study, we reported the complete chloroplast genome of C. cassia. The chloroplast genome of C. cassia with length of 152,675 bp is a characteristic quadripartite structure. The length of the inverted-repeats regions (IRs), large single-copy (LSC) region, and small single-copy (SSC) region of C. cassia was 20,068 bp, 93,663 and 18,876 bp. The chloroplast genome of C. cassia contains 124 genes, which includes 80 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs) and 8 ribosomal RNA genes (rRNAs). The overall nucleotide content of the chloroplast genome: 30.0% A (Adenine), 30.8% T (Thymine), 19.7% C (Cytosine), 19.5% G (Guanine), and 39.2% GC content. Evolutionary relationship result showed that Cinnamomum cassia was most closely related to Cinnamomum parthenoxylon in the family Lauraceae by the Neighbor-Joining (NJ) method. Taylor & Francis 2019-11-08 /pmc/articles/PMC7707686/ /pubmed/33366245 http://dx.doi.org/10.1080/23802359.2019.1687360 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Song, Kai
He, Man
Yu, Jingbo
Guan, Yanjun
Bai, Yumeng
Xin, Shuquan
Cao, Tianyi
Characterization of the chloroplast genome of the family Lauraceae plant species, Cinnamomum cassia
title Characterization of the chloroplast genome of the family Lauraceae plant species, Cinnamomum cassia
title_full Characterization of the chloroplast genome of the family Lauraceae plant species, Cinnamomum cassia
title_fullStr Characterization of the chloroplast genome of the family Lauraceae plant species, Cinnamomum cassia
title_full_unstemmed Characterization of the chloroplast genome of the family Lauraceae plant species, Cinnamomum cassia
title_short Characterization of the chloroplast genome of the family Lauraceae plant species, Cinnamomum cassia
title_sort characterization of the chloroplast genome of the family lauraceae plant species, cinnamomum cassia
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707686/
https://www.ncbi.nlm.nih.gov/pubmed/33366245
http://dx.doi.org/10.1080/23802359.2019.1687360
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