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Characterization of the chloroplast genome of the family Lauraceae plant species, Cinnamomum cassia
The fruit of Cinnamomum cassia is an important spice material and its branch is a common Chinese herbal medicine as the family Lauraceae. In this study, we reported the complete chloroplast genome of C. cassia. The chloroplast genome of C. cassia with length of 152,675 bp is a characteristic quadrip...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707686/ https://www.ncbi.nlm.nih.gov/pubmed/33366245 http://dx.doi.org/10.1080/23802359.2019.1687360 |
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author | Song, Kai He, Man Yu, Jingbo Guan, Yanjun Bai, Yumeng Xin, Shuquan Cao, Tianyi |
author_facet | Song, Kai He, Man Yu, Jingbo Guan, Yanjun Bai, Yumeng Xin, Shuquan Cao, Tianyi |
author_sort | Song, Kai |
collection | PubMed |
description | The fruit of Cinnamomum cassia is an important spice material and its branch is a common Chinese herbal medicine as the family Lauraceae. In this study, we reported the complete chloroplast genome of C. cassia. The chloroplast genome of C. cassia with length of 152,675 bp is a characteristic quadripartite structure. The length of the inverted-repeats regions (IRs), large single-copy (LSC) region, and small single-copy (SSC) region of C. cassia was 20,068 bp, 93,663 and 18,876 bp. The chloroplast genome of C. cassia contains 124 genes, which includes 80 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs) and 8 ribosomal RNA genes (rRNAs). The overall nucleotide content of the chloroplast genome: 30.0% A (Adenine), 30.8% T (Thymine), 19.7% C (Cytosine), 19.5% G (Guanine), and 39.2% GC content. Evolutionary relationship result showed that Cinnamomum cassia was most closely related to Cinnamomum parthenoxylon in the family Lauraceae by the Neighbor-Joining (NJ) method. |
format | Online Article Text |
id | pubmed-7707686 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77076862020-12-22 Characterization of the chloroplast genome of the family Lauraceae plant species, Cinnamomum cassia Song, Kai He, Man Yu, Jingbo Guan, Yanjun Bai, Yumeng Xin, Shuquan Cao, Tianyi Mitochondrial DNA B Resour Mitogenome Announcement The fruit of Cinnamomum cassia is an important spice material and its branch is a common Chinese herbal medicine as the family Lauraceae. In this study, we reported the complete chloroplast genome of C. cassia. The chloroplast genome of C. cassia with length of 152,675 bp is a characteristic quadripartite structure. The length of the inverted-repeats regions (IRs), large single-copy (LSC) region, and small single-copy (SSC) region of C. cassia was 20,068 bp, 93,663 and 18,876 bp. The chloroplast genome of C. cassia contains 124 genes, which includes 80 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs) and 8 ribosomal RNA genes (rRNAs). The overall nucleotide content of the chloroplast genome: 30.0% A (Adenine), 30.8% T (Thymine), 19.7% C (Cytosine), 19.5% G (Guanine), and 39.2% GC content. Evolutionary relationship result showed that Cinnamomum cassia was most closely related to Cinnamomum parthenoxylon in the family Lauraceae by the Neighbor-Joining (NJ) method. Taylor & Francis 2019-11-08 /pmc/articles/PMC7707686/ /pubmed/33366245 http://dx.doi.org/10.1080/23802359.2019.1687360 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Song, Kai He, Man Yu, Jingbo Guan, Yanjun Bai, Yumeng Xin, Shuquan Cao, Tianyi Characterization of the chloroplast genome of the family Lauraceae plant species, Cinnamomum cassia |
title | Characterization of the chloroplast genome of the family Lauraceae plant species, Cinnamomum cassia |
title_full | Characterization of the chloroplast genome of the family Lauraceae plant species, Cinnamomum cassia |
title_fullStr | Characterization of the chloroplast genome of the family Lauraceae plant species, Cinnamomum cassia |
title_full_unstemmed | Characterization of the chloroplast genome of the family Lauraceae plant species, Cinnamomum cassia |
title_short | Characterization of the chloroplast genome of the family Lauraceae plant species, Cinnamomum cassia |
title_sort | characterization of the chloroplast genome of the family lauraceae plant species, cinnamomum cassia |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707686/ https://www.ncbi.nlm.nih.gov/pubmed/33366245 http://dx.doi.org/10.1080/23802359.2019.1687360 |
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