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The complete chloroplast genome sequence of Pometia tomentosa
The first complete chloroplast genome (cpDNA) sequence of Pometia tomentosa was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,818 bp in length, contains a large single-copy region (LSC) of 85,666 bp and a small single-copy region (SSC) of 18,360 bp, which we...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707695/ https://www.ncbi.nlm.nih.gov/pubmed/33366265 http://dx.doi.org/10.1080/23802359.2019.1688114 |
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author | Wang, Yi Yuan, Xiaolong Zhang, Jinfeng |
author_facet | Wang, Yi Yuan, Xiaolong Zhang, Jinfeng |
author_sort | Wang, Yi |
collection | PubMed |
description | The first complete chloroplast genome (cpDNA) sequence of Pometia tomentosa was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,818 bp in length, contains a large single-copy region (LSC) of 85,666 bp and a small single-copy region (SSC) of 18,360 bp, which were separated by a pair of inverted repeat (IR) regions of 28,396 bp. The genome contains 133 genes, including 88 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 37.9%, and the corresponding values of the LSC, SSC, and IR regions are 36.2%, 31.9%, and 42.4%, respectively. Further phylogenomic analysis showed that P. tomentosa and Dimocarpus longan clustered in a clade in family Sapindaceae. |
format | Online Article Text |
id | pubmed-7707695 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77076952020-12-22 The complete chloroplast genome sequence of Pometia tomentosa Wang, Yi Yuan, Xiaolong Zhang, Jinfeng Mitochondrial DNA B Resour Mitogenome Announcement The first complete chloroplast genome (cpDNA) sequence of Pometia tomentosa was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,818 bp in length, contains a large single-copy region (LSC) of 85,666 bp and a small single-copy region (SSC) of 18,360 bp, which were separated by a pair of inverted repeat (IR) regions of 28,396 bp. The genome contains 133 genes, including 88 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 37.9%, and the corresponding values of the LSC, SSC, and IR regions are 36.2%, 31.9%, and 42.4%, respectively. Further phylogenomic analysis showed that P. tomentosa and Dimocarpus longan clustered in a clade in family Sapindaceae. Taylor & Francis 2019-11-12 /pmc/articles/PMC7707695/ /pubmed/33366265 http://dx.doi.org/10.1080/23802359.2019.1688114 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Wang, Yi Yuan, Xiaolong Zhang, Jinfeng The complete chloroplast genome sequence of Pometia tomentosa |
title | The complete chloroplast genome sequence of Pometia tomentosa |
title_full | The complete chloroplast genome sequence of Pometia tomentosa |
title_fullStr | The complete chloroplast genome sequence of Pometia tomentosa |
title_full_unstemmed | The complete chloroplast genome sequence of Pometia tomentosa |
title_short | The complete chloroplast genome sequence of Pometia tomentosa |
title_sort | complete chloroplast genome sequence of pometia tomentosa |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707695/ https://www.ncbi.nlm.nih.gov/pubmed/33366265 http://dx.doi.org/10.1080/23802359.2019.1688114 |
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