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The complete chloroplast genome of a Cymbidium Tortisepalum (Orchidaceae) male mutant
The chloroplast (cp) genome of natural male mutant Cymbidium tortisepalum ‘Guanshihe’ has been characterized using Illumina pair-end sequencing technology. The complete cp genome was 149,830 bp in length, containing a large single-copy region (LSC) of 85,131 bp and a small single-copy region (SSC) o...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707707/ https://www.ncbi.nlm.nih.gov/pubmed/33366331 http://dx.doi.org/10.1080/23802359.2019.1691948 |
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author | Sun, Yangna Chen, Yanqiong Lin, Han Ma, Xiaokai |
author_facet | Sun, Yangna Chen, Yanqiong Lin, Han Ma, Xiaokai |
author_sort | Sun, Yangna |
collection | PubMed |
description | The chloroplast (cp) genome of natural male mutant Cymbidium tortisepalum ‘Guanshihe’ has been characterized using Illumina pair-end sequencing technology. The complete cp genome was 149,830 bp in length, containing a large single-copy region (LSC) of 85,131 bp and a small single-copy region (SSC) of 13,275 bp, which were separated by a pair of 25,712 bp inverted repeat regions (IRs). The genome contained 130 genes, with 111 unique genes, including 77 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The overall GC content is 37.09% with the values of the LSC, SSC, and IR regions are 34.40%, 29.63%, and 43.45%, respectively. Further, phylogenetic analysis suggested that the plastome of C. tortisepalum male mutant ‘Guanshihe’ is close to sequenced C. sinense, C. kanran, C. tortisepalum, and C. ensifolium plastomes. |
format | Online Article Text |
id | pubmed-7707707 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77077072020-12-22 The complete chloroplast genome of a Cymbidium Tortisepalum (Orchidaceae) male mutant Sun, Yangna Chen, Yanqiong Lin, Han Ma, Xiaokai Mitochondrial DNA B Resour Mitogenome Announcement The chloroplast (cp) genome of natural male mutant Cymbidium tortisepalum ‘Guanshihe’ has been characterized using Illumina pair-end sequencing technology. The complete cp genome was 149,830 bp in length, containing a large single-copy region (LSC) of 85,131 bp and a small single-copy region (SSC) of 13,275 bp, which were separated by a pair of 25,712 bp inverted repeat regions (IRs). The genome contained 130 genes, with 111 unique genes, including 77 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The overall GC content is 37.09% with the values of the LSC, SSC, and IR regions are 34.40%, 29.63%, and 43.45%, respectively. Further, phylogenetic analysis suggested that the plastome of C. tortisepalum male mutant ‘Guanshihe’ is close to sequenced C. sinense, C. kanran, C. tortisepalum, and C. ensifolium plastomes. Taylor & Francis 2019-11-18 /pmc/articles/PMC7707707/ /pubmed/33366331 http://dx.doi.org/10.1080/23802359.2019.1691948 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Sun, Yangna Chen, Yanqiong Lin, Han Ma, Xiaokai The complete chloroplast genome of a Cymbidium Tortisepalum (Orchidaceae) male mutant |
title | The complete chloroplast genome of a Cymbidium Tortisepalum (Orchidaceae) male mutant |
title_full | The complete chloroplast genome of a Cymbidium Tortisepalum (Orchidaceae) male mutant |
title_fullStr | The complete chloroplast genome of a Cymbidium Tortisepalum (Orchidaceae) male mutant |
title_full_unstemmed | The complete chloroplast genome of a Cymbidium Tortisepalum (Orchidaceae) male mutant |
title_short | The complete chloroplast genome of a Cymbidium Tortisepalum (Orchidaceae) male mutant |
title_sort | complete chloroplast genome of a cymbidium tortisepalum (orchidaceae) male mutant |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707707/ https://www.ncbi.nlm.nih.gov/pubmed/33366331 http://dx.doi.org/10.1080/23802359.2019.1691948 |
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