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Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant

Ardisia gigantifolia (Myrsinaceae) is a perennial shrub and widely distributed in Southeast Asia. It is well known for its medicinal values and has the potential for development of novel phytopharmaceuticals. Here, we first report and characterize its complete chloroplast genome based on Illumina pa...

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Detalles Bibliográficos
Autores principales: Shi, Yancai, Liu, Bingbing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707709/
https://www.ncbi.nlm.nih.gov/pubmed/33366306
http://dx.doi.org/10.1080/23802359.2019.1688727
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author Shi, Yancai
Liu, Bingbing
author_facet Shi, Yancai
Liu, Bingbing
author_sort Shi, Yancai
collection PubMed
description Ardisia gigantifolia (Myrsinaceae) is a perennial shrub and widely distributed in Southeast Asia. It is well known for its medicinal values and has the potential for development of novel phytopharmaceuticals. Here, we first report and characterize its complete chloroplast genome based on Illumina paired-end sequencing data. The complete plastid genome was 156,216 bp, which contained inverted repeats (IR) of 26,047 bp separated by a large single-copy (LSC) and a small single-copy (SSC) regions of 85,725 bp and 18,397 bp, respectively. The cpDNA contains 134 genes, comprising 88 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 1 processed pseudogene. The overall GC content of the plastome is 37.3%. The phylogenetic analysis of 17 selected chloroplast genomes demonstrated that A. gigantifolia is closely related to the congeneric A. polysticta.
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spelling pubmed-77077092020-12-22 Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant Shi, Yancai Liu, Bingbing Mitochondrial DNA B Resour Mitogenome Announcement Ardisia gigantifolia (Myrsinaceae) is a perennial shrub and widely distributed in Southeast Asia. It is well known for its medicinal values and has the potential for development of novel phytopharmaceuticals. Here, we first report and characterize its complete chloroplast genome based on Illumina paired-end sequencing data. The complete plastid genome was 156,216 bp, which contained inverted repeats (IR) of 26,047 bp separated by a large single-copy (LSC) and a small single-copy (SSC) regions of 85,725 bp and 18,397 bp, respectively. The cpDNA contains 134 genes, comprising 88 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 1 processed pseudogene. The overall GC content of the plastome is 37.3%. The phylogenetic analysis of 17 selected chloroplast genomes demonstrated that A. gigantifolia is closely related to the congeneric A. polysticta. Taylor & Francis 2019-11-13 /pmc/articles/PMC7707709/ /pubmed/33366306 http://dx.doi.org/10.1080/23802359.2019.1688727 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Shi, Yancai
Liu, Bingbing
Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant
title Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant
title_full Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant
title_fullStr Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant
title_full_unstemmed Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant
title_short Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant
title_sort complete chloroplast genome sequence of ardisia gigantifolia (myrsinaceae), a vulnerable medicinal plant
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707709/
https://www.ncbi.nlm.nih.gov/pubmed/33366306
http://dx.doi.org/10.1080/23802359.2019.1688727
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