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Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant
Ardisia gigantifolia (Myrsinaceae) is a perennial shrub and widely distributed in Southeast Asia. It is well known for its medicinal values and has the potential for development of novel phytopharmaceuticals. Here, we first report and characterize its complete chloroplast genome based on Illumina pa...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707709/ https://www.ncbi.nlm.nih.gov/pubmed/33366306 http://dx.doi.org/10.1080/23802359.2019.1688727 |
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author | Shi, Yancai Liu, Bingbing |
author_facet | Shi, Yancai Liu, Bingbing |
author_sort | Shi, Yancai |
collection | PubMed |
description | Ardisia gigantifolia (Myrsinaceae) is a perennial shrub and widely distributed in Southeast Asia. It is well known for its medicinal values and has the potential for development of novel phytopharmaceuticals. Here, we first report and characterize its complete chloroplast genome based on Illumina paired-end sequencing data. The complete plastid genome was 156,216 bp, which contained inverted repeats (IR) of 26,047 bp separated by a large single-copy (LSC) and a small single-copy (SSC) regions of 85,725 bp and 18,397 bp, respectively. The cpDNA contains 134 genes, comprising 88 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 1 processed pseudogene. The overall GC content of the plastome is 37.3%. The phylogenetic analysis of 17 selected chloroplast genomes demonstrated that A. gigantifolia is closely related to the congeneric A. polysticta. |
format | Online Article Text |
id | pubmed-7707709 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77077092020-12-22 Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant Shi, Yancai Liu, Bingbing Mitochondrial DNA B Resour Mitogenome Announcement Ardisia gigantifolia (Myrsinaceae) is a perennial shrub and widely distributed in Southeast Asia. It is well known for its medicinal values and has the potential for development of novel phytopharmaceuticals. Here, we first report and characterize its complete chloroplast genome based on Illumina paired-end sequencing data. The complete plastid genome was 156,216 bp, which contained inverted repeats (IR) of 26,047 bp separated by a large single-copy (LSC) and a small single-copy (SSC) regions of 85,725 bp and 18,397 bp, respectively. The cpDNA contains 134 genes, comprising 88 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 1 processed pseudogene. The overall GC content of the plastome is 37.3%. The phylogenetic analysis of 17 selected chloroplast genomes demonstrated that A. gigantifolia is closely related to the congeneric A. polysticta. Taylor & Francis 2019-11-13 /pmc/articles/PMC7707709/ /pubmed/33366306 http://dx.doi.org/10.1080/23802359.2019.1688727 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Shi, Yancai Liu, Bingbing Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant |
title | Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant |
title_full | Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant |
title_fullStr | Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant |
title_full_unstemmed | Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant |
title_short | Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant |
title_sort | complete chloroplast genome sequence of ardisia gigantifolia (myrsinaceae), a vulnerable medicinal plant |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707709/ https://www.ncbi.nlm.nih.gov/pubmed/33366306 http://dx.doi.org/10.1080/23802359.2019.1688727 |
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