Complete chloroplast genome sequence of Dysosma versipellis (Berberidaceae), a rare and threatened species endemic to China

Dysosma versipellis (Berberidaceae) is a rare and threatened medicinal herb endemic to subtropical China. Here, we first report and characterize its complete chloroplast genome based on Illumina paired-end sequencing data. The complete plastid genome was 156,735 bp, which contained inverted repeats...

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Autores principales: Shi, Yancai, Yuan, Haiping, Zou, Rong, Liu, Bingbing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707710/
https://www.ncbi.nlm.nih.gov/pubmed/33366390
http://dx.doi.org/10.1080/23802359.2019.1693928
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author Shi, Yancai
Yuan, Haiping
Zou, Rong
Liu, Bingbing
author_facet Shi, Yancai
Yuan, Haiping
Zou, Rong
Liu, Bingbing
author_sort Shi, Yancai
collection PubMed
description Dysosma versipellis (Berberidaceae) is a rare and threatened medicinal herb endemic to subtropical China. Here, we first report and characterize its complete chloroplast genome based on Illumina paired-end sequencing data. The complete plastid genome was 156,735 bp, which contained inverted repeats (IR) of 25,925 bp separated by a large single copy (LSC) and a small single copy (SSC) of 86,514 bp and 18,371 bp, respectively. The cpDNA contains 133 genes, comprising 86 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 2 processed pseudogenes. The overall GC content of the plastome is 38.5%. The phylogenetic analysis of 17 selected chloroplast genomes demonstrated that D. versipellis is closely related to the congeneric D. pleiantha.
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spelling pubmed-77077102020-12-22 Complete chloroplast genome sequence of Dysosma versipellis (Berberidaceae), a rare and threatened species endemic to China Shi, Yancai Yuan, Haiping Zou, Rong Liu, Bingbing Mitochondrial DNA B Resour Mitogenome Announcement Dysosma versipellis (Berberidaceae) is a rare and threatened medicinal herb endemic to subtropical China. Here, we first report and characterize its complete chloroplast genome based on Illumina paired-end sequencing data. The complete plastid genome was 156,735 bp, which contained inverted repeats (IR) of 25,925 bp separated by a large single copy (LSC) and a small single copy (SSC) of 86,514 bp and 18,371 bp, respectively. The cpDNA contains 133 genes, comprising 86 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 2 processed pseudogenes. The overall GC content of the plastome is 38.5%. The phylogenetic analysis of 17 selected chloroplast genomes demonstrated that D. versipellis is closely related to the congeneric D. pleiantha. Taylor & Francis 2019-11-22 /pmc/articles/PMC7707710/ /pubmed/33366390 http://dx.doi.org/10.1080/23802359.2019.1693928 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Shi, Yancai
Yuan, Haiping
Zou, Rong
Liu, Bingbing
Complete chloroplast genome sequence of Dysosma versipellis (Berberidaceae), a rare and threatened species endemic to China
title Complete chloroplast genome sequence of Dysosma versipellis (Berberidaceae), a rare and threatened species endemic to China
title_full Complete chloroplast genome sequence of Dysosma versipellis (Berberidaceae), a rare and threatened species endemic to China
title_fullStr Complete chloroplast genome sequence of Dysosma versipellis (Berberidaceae), a rare and threatened species endemic to China
title_full_unstemmed Complete chloroplast genome sequence of Dysosma versipellis (Berberidaceae), a rare and threatened species endemic to China
title_short Complete chloroplast genome sequence of Dysosma versipellis (Berberidaceae), a rare and threatened species endemic to China
title_sort complete chloroplast genome sequence of dysosma versipellis (berberidaceae), a rare and threatened species endemic to china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707710/
https://www.ncbi.nlm.nih.gov/pubmed/33366390
http://dx.doi.org/10.1080/23802359.2019.1693928
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