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Characterization of the complete plastid genome of Acer tsinglingense, an endemic tree species in China

Acer tsinglingense is an ecologically and economically important tree species in China. In this study, we characterized its whole plastid genome sequence using the Illumina sequencing platform. The complete plastid genome size of A. tsinglingense is 156,039 bp in length, including a large single-cop...

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Autores principales: Dong, Peng-Bin, Liu, Yu, Gao, Qi-Yuan, Yang, Ting, Chen, Xue-Yi, Yang, Jia-Yu, Shang, Qian-Han, Fang, Min-Feng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707715/
https://www.ncbi.nlm.nih.gov/pubmed/33366320
http://dx.doi.org/10.1080/23802359.2019.1689863
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author Dong, Peng-Bin
Liu, Yu
Gao, Qi-Yuan
Yang, Ting
Chen, Xue-Yi
Yang, Jia-Yu
Shang, Qian-Han
Fang, Min-Feng
author_facet Dong, Peng-Bin
Liu, Yu
Gao, Qi-Yuan
Yang, Ting
Chen, Xue-Yi
Yang, Jia-Yu
Shang, Qian-Han
Fang, Min-Feng
author_sort Dong, Peng-Bin
collection PubMed
description Acer tsinglingense is an ecologically and economically important tree species in China. In this study, we characterized its whole plastid genome sequence using the Illumina sequencing platform. The complete plastid genome size of A. tsinglingense is 156,039 bp in length, including a large single-copy [LSC] region of 85,760 bp, a small single-copy [SSC] region of 18,139 bp, and a pair of inverted repeats [IRs] of 26,070 bp. The genome contains 137 genes, including 89 protein-coding genes, 40 tRNA genes, and 8 rRNA genes. The GC contents in chloroplast genome, LSC region, SSC region, and IR region were 38.0%, 36.2%, 32.4%, and 42.9%, respectively. The phylogenetic analysis based on the plastid genomes showed that A. tsinglingense was more closely related with the congeneric A. laevigatum, A. palmatum, A. wilsonii, and A. buergerianum, these species were clustered into a monophyletic clade with high bootstrap support.
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spelling pubmed-77077152020-12-22 Characterization of the complete plastid genome of Acer tsinglingense, an endemic tree species in China Dong, Peng-Bin Liu, Yu Gao, Qi-Yuan Yang, Ting Chen, Xue-Yi Yang, Jia-Yu Shang, Qian-Han Fang, Min-Feng Mitochondrial DNA B Resour Mitogenome Announcement Acer tsinglingense is an ecologically and economically important tree species in China. In this study, we characterized its whole plastid genome sequence using the Illumina sequencing platform. The complete plastid genome size of A. tsinglingense is 156,039 bp in length, including a large single-copy [LSC] region of 85,760 bp, a small single-copy [SSC] region of 18,139 bp, and a pair of inverted repeats [IRs] of 26,070 bp. The genome contains 137 genes, including 89 protein-coding genes, 40 tRNA genes, and 8 rRNA genes. The GC contents in chloroplast genome, LSC region, SSC region, and IR region were 38.0%, 36.2%, 32.4%, and 42.9%, respectively. The phylogenetic analysis based on the plastid genomes showed that A. tsinglingense was more closely related with the congeneric A. laevigatum, A. palmatum, A. wilsonii, and A. buergerianum, these species were clustered into a monophyletic clade with high bootstrap support. Taylor & Francis 2019-11-18 /pmc/articles/PMC7707715/ /pubmed/33366320 http://dx.doi.org/10.1080/23802359.2019.1689863 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Dong, Peng-Bin
Liu, Yu
Gao, Qi-Yuan
Yang, Ting
Chen, Xue-Yi
Yang, Jia-Yu
Shang, Qian-Han
Fang, Min-Feng
Characterization of the complete plastid genome of Acer tsinglingense, an endemic tree species in China
title Characterization of the complete plastid genome of Acer tsinglingense, an endemic tree species in China
title_full Characterization of the complete plastid genome of Acer tsinglingense, an endemic tree species in China
title_fullStr Characterization of the complete plastid genome of Acer tsinglingense, an endemic tree species in China
title_full_unstemmed Characterization of the complete plastid genome of Acer tsinglingense, an endemic tree species in China
title_short Characterization of the complete plastid genome of Acer tsinglingense, an endemic tree species in China
title_sort characterization of the complete plastid genome of acer tsinglingense, an endemic tree species in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707715/
https://www.ncbi.nlm.nih.gov/pubmed/33366320
http://dx.doi.org/10.1080/23802359.2019.1689863
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