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DNA barcoding of spiders from agricultural fields

In the present study, DNA barcoding was used to assess the percentage accuracy of morphological base identification of spiders from the agriculture fields of district Layyah, Punjab, Pakistan. A total of 872 spiders were captured from June to August of 2017. All the collected spiders were brought to...

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Autores principales: Tahir, Hafiz Muhammad, Summer, Muhammad, Mehmood, Sana, Ashraf, Sehrish, Naseem, Sajida
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707727/
https://www.ncbi.nlm.nih.gov/pubmed/33366358
http://dx.doi.org/10.1080/23802359.2019.1693283
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author Tahir, Hafiz Muhammad
Summer, Muhammad
Mehmood, Sana
Ashraf, Sehrish
Naseem, Sajida
author_facet Tahir, Hafiz Muhammad
Summer, Muhammad
Mehmood, Sana
Ashraf, Sehrish
Naseem, Sajida
author_sort Tahir, Hafiz Muhammad
collection PubMed
description In the present study, DNA barcoding was used to assess the percentage accuracy of morphological base identification of spiders from the agriculture fields of district Layyah, Punjab, Pakistan. A total of 872 spiders were captured from June to August of 2017. All the collected spiders were brought to molecular laboratory at GC University Lahore, preserved in 95% ethanol and stored at −20 °C until the DNA extraction. Spiders were evaluated morphologically on the basis of different identification Keys and Catalogs. Morphological identification revealed the presence of 12 families, 29 genra and 49 species. To evaluate the authenticity of morphological identification, tissue samples of 96 specimens were sent to Canadian Center for Biodiversity and Genomics, University of Guelph, Canada. A 658-base pair sequence of COI (Cytochrome c Oxidase Subunit I) of 90 specimens was retrieved successfully, which confirmed the presence of 11 families, 25 genra and 47 species. On the basis of molecular results, all the misidentified specimens were then allotted the correct taxon. Overall accuracy of morphological based identification was 88%. It is concluded from the present study that morphological investigations to identify a spider, are satisfactory but to enhance the accuracy, pace and credibility of results, molecular technique like DNA barcoding is considerable. Furthermore, to magnify authenticity of evaluation of spiders, integrated barcoding- combination of molecular methods and conventional taxonomy- is compulsory.
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spelling pubmed-77077272020-12-22 DNA barcoding of spiders from agricultural fields Tahir, Hafiz Muhammad Summer, Muhammad Mehmood, Sana Ashraf, Sehrish Naseem, Sajida Mitochondrial DNA B Resour Mito Communication In the present study, DNA barcoding was used to assess the percentage accuracy of morphological base identification of spiders from the agriculture fields of district Layyah, Punjab, Pakistan. A total of 872 spiders were captured from June to August of 2017. All the collected spiders were brought to molecular laboratory at GC University Lahore, preserved in 95% ethanol and stored at −20 °C until the DNA extraction. Spiders were evaluated morphologically on the basis of different identification Keys and Catalogs. Morphological identification revealed the presence of 12 families, 29 genra and 49 species. To evaluate the authenticity of morphological identification, tissue samples of 96 specimens were sent to Canadian Center for Biodiversity and Genomics, University of Guelph, Canada. A 658-base pair sequence of COI (Cytochrome c Oxidase Subunit I) of 90 specimens was retrieved successfully, which confirmed the presence of 11 families, 25 genra and 47 species. On the basis of molecular results, all the misidentified specimens were then allotted the correct taxon. Overall accuracy of morphological based identification was 88%. It is concluded from the present study that morphological investigations to identify a spider, are satisfactory but to enhance the accuracy, pace and credibility of results, molecular technique like DNA barcoding is considerable. Furthermore, to magnify authenticity of evaluation of spiders, integrated barcoding- combination of molecular methods and conventional taxonomy- is compulsory. Taylor & Francis 2019-11-20 /pmc/articles/PMC7707727/ /pubmed/33366358 http://dx.doi.org/10.1080/23802359.2019.1693283 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mito Communication
Tahir, Hafiz Muhammad
Summer, Muhammad
Mehmood, Sana
Ashraf, Sehrish
Naseem, Sajida
DNA barcoding of spiders from agricultural fields
title DNA barcoding of spiders from agricultural fields
title_full DNA barcoding of spiders from agricultural fields
title_fullStr DNA barcoding of spiders from agricultural fields
title_full_unstemmed DNA barcoding of spiders from agricultural fields
title_short DNA barcoding of spiders from agricultural fields
title_sort dna barcoding of spiders from agricultural fields
topic Mito Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707727/
https://www.ncbi.nlm.nih.gov/pubmed/33366358
http://dx.doi.org/10.1080/23802359.2019.1693283
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