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DNA barcoding of spiders from agricultural fields
In the present study, DNA barcoding was used to assess the percentage accuracy of morphological base identification of spiders from the agriculture fields of district Layyah, Punjab, Pakistan. A total of 872 spiders were captured from June to August of 2017. All the collected spiders were brought to...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707727/ https://www.ncbi.nlm.nih.gov/pubmed/33366358 http://dx.doi.org/10.1080/23802359.2019.1693283 |
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author | Tahir, Hafiz Muhammad Summer, Muhammad Mehmood, Sana Ashraf, Sehrish Naseem, Sajida |
author_facet | Tahir, Hafiz Muhammad Summer, Muhammad Mehmood, Sana Ashraf, Sehrish Naseem, Sajida |
author_sort | Tahir, Hafiz Muhammad |
collection | PubMed |
description | In the present study, DNA barcoding was used to assess the percentage accuracy of morphological base identification of spiders from the agriculture fields of district Layyah, Punjab, Pakistan. A total of 872 spiders were captured from June to August of 2017. All the collected spiders were brought to molecular laboratory at GC University Lahore, preserved in 95% ethanol and stored at −20 °C until the DNA extraction. Spiders were evaluated morphologically on the basis of different identification Keys and Catalogs. Morphological identification revealed the presence of 12 families, 29 genra and 49 species. To evaluate the authenticity of morphological identification, tissue samples of 96 specimens were sent to Canadian Center for Biodiversity and Genomics, University of Guelph, Canada. A 658-base pair sequence of COI (Cytochrome c Oxidase Subunit I) of 90 specimens was retrieved successfully, which confirmed the presence of 11 families, 25 genra and 47 species. On the basis of molecular results, all the misidentified specimens were then allotted the correct taxon. Overall accuracy of morphological based identification was 88%. It is concluded from the present study that morphological investigations to identify a spider, are satisfactory but to enhance the accuracy, pace and credibility of results, molecular technique like DNA barcoding is considerable. Furthermore, to magnify authenticity of evaluation of spiders, integrated barcoding- combination of molecular methods and conventional taxonomy- is compulsory. |
format | Online Article Text |
id | pubmed-7707727 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77077272020-12-22 DNA barcoding of spiders from agricultural fields Tahir, Hafiz Muhammad Summer, Muhammad Mehmood, Sana Ashraf, Sehrish Naseem, Sajida Mitochondrial DNA B Resour Mito Communication In the present study, DNA barcoding was used to assess the percentage accuracy of morphological base identification of spiders from the agriculture fields of district Layyah, Punjab, Pakistan. A total of 872 spiders were captured from June to August of 2017. All the collected spiders were brought to molecular laboratory at GC University Lahore, preserved in 95% ethanol and stored at −20 °C until the DNA extraction. Spiders were evaluated morphologically on the basis of different identification Keys and Catalogs. Morphological identification revealed the presence of 12 families, 29 genra and 49 species. To evaluate the authenticity of morphological identification, tissue samples of 96 specimens were sent to Canadian Center for Biodiversity and Genomics, University of Guelph, Canada. A 658-base pair sequence of COI (Cytochrome c Oxidase Subunit I) of 90 specimens was retrieved successfully, which confirmed the presence of 11 families, 25 genra and 47 species. On the basis of molecular results, all the misidentified specimens were then allotted the correct taxon. Overall accuracy of morphological based identification was 88%. It is concluded from the present study that morphological investigations to identify a spider, are satisfactory but to enhance the accuracy, pace and credibility of results, molecular technique like DNA barcoding is considerable. Furthermore, to magnify authenticity of evaluation of spiders, integrated barcoding- combination of molecular methods and conventional taxonomy- is compulsory. Taylor & Francis 2019-11-20 /pmc/articles/PMC7707727/ /pubmed/33366358 http://dx.doi.org/10.1080/23802359.2019.1693283 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mito Communication Tahir, Hafiz Muhammad Summer, Muhammad Mehmood, Sana Ashraf, Sehrish Naseem, Sajida DNA barcoding of spiders from agricultural fields |
title | DNA barcoding of spiders from agricultural fields |
title_full | DNA barcoding of spiders from agricultural fields |
title_fullStr | DNA barcoding of spiders from agricultural fields |
title_full_unstemmed | DNA barcoding of spiders from agricultural fields |
title_short | DNA barcoding of spiders from agricultural fields |
title_sort | dna barcoding of spiders from agricultural fields |
topic | Mito Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707727/ https://www.ncbi.nlm.nih.gov/pubmed/33366358 http://dx.doi.org/10.1080/23802359.2019.1693283 |
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