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Characterization of the complete chloroplast genome of Paederia scandens (Rubiaceae): a Chinese folk medicinal plant
Paederia scandens has been used as a traditional medicine in Asian countries to treat jaundice, dysentery, and the pain of rheumatism. The complete chloroplast (cp) genome sequence of P. scandens was reported and characterized in this study. The cp genome is 153,626 bp in length, composed of a pair...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707732/ https://www.ncbi.nlm.nih.gov/pubmed/33366325 http://dx.doi.org/10.1080/23802359.2019.1691068 |
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author | Li, Zheng-Hui Ye, Ke Lv, Xiao Zhang, Xian Ling, Li-Zhen Ai, Hong-Lian Zhang, Shu-Dong |
author_facet | Li, Zheng-Hui Ye, Ke Lv, Xiao Zhang, Xian Ling, Li-Zhen Ai, Hong-Lian Zhang, Shu-Dong |
author_sort | Li, Zheng-Hui |
collection | PubMed |
description | Paederia scandens has been used as a traditional medicine in Asian countries to treat jaundice, dysentery, and the pain of rheumatism. The complete chloroplast (cp) genome sequence of P. scandens was reported and characterized in this study. The cp genome is 153,626 bp in length, composed of a pair of 26,513 bp inverted repeat (IR) regions separated by a large single-copy (LSC) region of 83,712 bp and a small single-copy (SSC) region of 16,888 bp. There were 131 predicted genes (86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes) in the genome, and the overall GC content of the genome is 37.7%. Phylogenetic analysis based on the cp genome data showed that P. scandens was sister to the clade formed by Galium mollugo and G. aparine. |
format | Online Article Text |
id | pubmed-7707732 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77077322020-12-22 Characterization of the complete chloroplast genome of Paederia scandens (Rubiaceae): a Chinese folk medicinal plant Li, Zheng-Hui Ye, Ke Lv, Xiao Zhang, Xian Ling, Li-Zhen Ai, Hong-Lian Zhang, Shu-Dong Mitochondrial DNA B Resour Mitogenome Announcement Paederia scandens has been used as a traditional medicine in Asian countries to treat jaundice, dysentery, and the pain of rheumatism. The complete chloroplast (cp) genome sequence of P. scandens was reported and characterized in this study. The cp genome is 153,626 bp in length, composed of a pair of 26,513 bp inverted repeat (IR) regions separated by a large single-copy (LSC) region of 83,712 bp and a small single-copy (SSC) region of 16,888 bp. There were 131 predicted genes (86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes) in the genome, and the overall GC content of the genome is 37.7%. Phylogenetic analysis based on the cp genome data showed that P. scandens was sister to the clade formed by Galium mollugo and G. aparine. Taylor & Francis 2019-11-18 /pmc/articles/PMC7707732/ /pubmed/33366325 http://dx.doi.org/10.1080/23802359.2019.1691068 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Li, Zheng-Hui Ye, Ke Lv, Xiao Zhang, Xian Ling, Li-Zhen Ai, Hong-Lian Zhang, Shu-Dong Characterization of the complete chloroplast genome of Paederia scandens (Rubiaceae): a Chinese folk medicinal plant |
title | Characterization of the complete chloroplast genome of Paederia scandens (Rubiaceae): a Chinese folk medicinal plant |
title_full | Characterization of the complete chloroplast genome of Paederia scandens (Rubiaceae): a Chinese folk medicinal plant |
title_fullStr | Characterization of the complete chloroplast genome of Paederia scandens (Rubiaceae): a Chinese folk medicinal plant |
title_full_unstemmed | Characterization of the complete chloroplast genome of Paederia scandens (Rubiaceae): a Chinese folk medicinal plant |
title_short | Characterization of the complete chloroplast genome of Paederia scandens (Rubiaceae): a Chinese folk medicinal plant |
title_sort | characterization of the complete chloroplast genome of paederia scandens (rubiaceae): a chinese folk medicinal plant |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707732/ https://www.ncbi.nlm.nih.gov/pubmed/33366325 http://dx.doi.org/10.1080/23802359.2019.1691068 |
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