Complete chloroplast genome sequence of Ligustrum quihoui (Oleaceae): genome structure and genomic resources

Ligustrum quihoui is popular as landscape plants used as hedges in gardens. In this study, we sequenced the complete chloroplast genome of L. quihoui based on next-generation sequencing and used the data to assess genomic resources. The chloroplast genome of L. quihoui is 163,575 bp in length consis...

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Detalles Bibliográficos
Autores principales: Wang, Lei, Wang, Ning, Sun, Jiahui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707733/
https://www.ncbi.nlm.nih.gov/pubmed/33366311
http://dx.doi.org/10.1080/23802359.2019.1687349
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author Wang, Lei
Wang, Ning
Sun, Jiahui
author_facet Wang, Lei
Wang, Ning
Sun, Jiahui
author_sort Wang, Lei
collection PubMed
description Ligustrum quihoui is popular as landscape plants used as hedges in gardens. In this study, we sequenced the complete chloroplast genome of L. quihoui based on next-generation sequencing and used the data to assess genomic resources. The chloroplast genome of L. quihoui is 163,575 bp in length consisting of large and small single-copy regions of length 88,072 and 11,493 bp, separated by two IR regions of 32,005 bp. De novo assembly and annotation showed the presence of 115 unique genes with 81 protein-coding genes, 30 tRNA genes, and four rRNA genes. A total of 62 perfect chloroplast simple sequence repeats were analyzed in the L. quihoui. A maximum-likelihood phylogenomic analysis showed that L. quihoui was sister to L. gracile.
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spelling pubmed-77077332020-12-22 Complete chloroplast genome sequence of Ligustrum quihoui (Oleaceae): genome structure and genomic resources Wang, Lei Wang, Ning Sun, Jiahui Mitochondrial DNA B Resour Mitogenome Announcement Ligustrum quihoui is popular as landscape plants used as hedges in gardens. In this study, we sequenced the complete chloroplast genome of L. quihoui based on next-generation sequencing and used the data to assess genomic resources. The chloroplast genome of L. quihoui is 163,575 bp in length consisting of large and small single-copy regions of length 88,072 and 11,493 bp, separated by two IR regions of 32,005 bp. De novo assembly and annotation showed the presence of 115 unique genes with 81 protein-coding genes, 30 tRNA genes, and four rRNA genes. A total of 62 perfect chloroplast simple sequence repeats were analyzed in the L. quihoui. A maximum-likelihood phylogenomic analysis showed that L. quihoui was sister to L. gracile. Taylor & Francis 2019-11-13 /pmc/articles/PMC7707733/ /pubmed/33366311 http://dx.doi.org/10.1080/23802359.2019.1687349 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Wang, Lei
Wang, Ning
Sun, Jiahui
Complete chloroplast genome sequence of Ligustrum quihoui (Oleaceae): genome structure and genomic resources
title Complete chloroplast genome sequence of Ligustrum quihoui (Oleaceae): genome structure and genomic resources
title_full Complete chloroplast genome sequence of Ligustrum quihoui (Oleaceae): genome structure and genomic resources
title_fullStr Complete chloroplast genome sequence of Ligustrum quihoui (Oleaceae): genome structure and genomic resources
title_full_unstemmed Complete chloroplast genome sequence of Ligustrum quihoui (Oleaceae): genome structure and genomic resources
title_short Complete chloroplast genome sequence of Ligustrum quihoui (Oleaceae): genome structure and genomic resources
title_sort complete chloroplast genome sequence of ligustrum quihoui (oleaceae): genome structure and genomic resources
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707733/
https://www.ncbi.nlm.nih.gov/pubmed/33366311
http://dx.doi.org/10.1080/23802359.2019.1687349
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