The complete chloroplast genome sequence of the threatened Cypripedium calceolus (Orchidaceae)

The complete chloroplast genome of Cypripedium calceolus, a rare species in the family Orchidaceae was reported in this study. The genome size is 175,122 bp in length, and contains four sub-regions: 97,486 bp of large single copy (LSC) and 22,260 bp of small copy (SSC) regions, separated by 27,688 b...

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Autores principales: Zhang, Li-Jie, Ding, Rui, Meng, Wei-Wei, Hu, Hua-Lei, Chen, Xu-Hui, Wu, Hai-Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707734/
https://www.ncbi.nlm.nih.gov/pubmed/33366391
http://dx.doi.org/10.1080/23802359.2019.1693933
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author Zhang, Li-Jie
Ding, Rui
Meng, Wei-Wei
Hu, Hua-Lei
Chen, Xu-Hui
Wu, Hai-Hong
author_facet Zhang, Li-Jie
Ding, Rui
Meng, Wei-Wei
Hu, Hua-Lei
Chen, Xu-Hui
Wu, Hai-Hong
author_sort Zhang, Li-Jie
collection PubMed
description The complete chloroplast genome of Cypripedium calceolus, a rare species in the family Orchidaceae was reported in this study. The genome size is 175,122 bp in length, and contains four sub-regions: 97,486 bp of large single copy (LSC) and 22,260 bp of small copy (SSC) regions, separated by 27,688 bp of inverted repeat (IR) regions. A total of 133 genes were annotated, including 87 protein-coding genes, 38 tRNA genes and 8 rRNA genes. The GC content of this cp genome is 34.36%. Phylogenetic analysis revealed a close relationship between C. calceolus with C. japonicum and C. formosanum. This is the first complete cp genome for C. calceolus that would be useful for conservation and phylogenetic studies of this species.
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spelling pubmed-77077342020-12-22 The complete chloroplast genome sequence of the threatened Cypripedium calceolus (Orchidaceae) Zhang, Li-Jie Ding, Rui Meng, Wei-Wei Hu, Hua-Lei Chen, Xu-Hui Wu, Hai-Hong Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome of Cypripedium calceolus, a rare species in the family Orchidaceae was reported in this study. The genome size is 175,122 bp in length, and contains four sub-regions: 97,486 bp of large single copy (LSC) and 22,260 bp of small copy (SSC) regions, separated by 27,688 bp of inverted repeat (IR) regions. A total of 133 genes were annotated, including 87 protein-coding genes, 38 tRNA genes and 8 rRNA genes. The GC content of this cp genome is 34.36%. Phylogenetic analysis revealed a close relationship between C. calceolus with C. japonicum and C. formosanum. This is the first complete cp genome for C. calceolus that would be useful for conservation and phylogenetic studies of this species. Taylor & Francis 2019-11-22 /pmc/articles/PMC7707734/ /pubmed/33366391 http://dx.doi.org/10.1080/23802359.2019.1693933 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhang, Li-Jie
Ding, Rui
Meng, Wei-Wei
Hu, Hua-Lei
Chen, Xu-Hui
Wu, Hai-Hong
The complete chloroplast genome sequence of the threatened Cypripedium calceolus (Orchidaceae)
title The complete chloroplast genome sequence of the threatened Cypripedium calceolus (Orchidaceae)
title_full The complete chloroplast genome sequence of the threatened Cypripedium calceolus (Orchidaceae)
title_fullStr The complete chloroplast genome sequence of the threatened Cypripedium calceolus (Orchidaceae)
title_full_unstemmed The complete chloroplast genome sequence of the threatened Cypripedium calceolus (Orchidaceae)
title_short The complete chloroplast genome sequence of the threatened Cypripedium calceolus (Orchidaceae)
title_sort complete chloroplast genome sequence of the threatened cypripedium calceolus (orchidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707734/
https://www.ncbi.nlm.nih.gov/pubmed/33366391
http://dx.doi.org/10.1080/23802359.2019.1693933
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