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Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river
The complete mitochondrial genome of Silurus soldatovi firstly collected from a native Korean river was determined by the bioinformatics assembly of the next-generation sequencing (NGS) reads. The circular mitogenome was 16,525 bp in length which harbored canonical 13 protein-coding genes, 22 tRNAs,...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707740/ https://www.ncbi.nlm.nih.gov/pubmed/33366235 http://dx.doi.org/10.1080/23802359.2019.1687347 |
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author | Alam, Md. Jobaidul Khalil, Mahmoud Aboalyamin Soliman Kim, Kyung Su Andriyono, Sapto Choi, Chang Geun Kim, Hyun-Woo |
author_facet | Alam, Md. Jobaidul Khalil, Mahmoud Aboalyamin Soliman Kim, Kyung Su Andriyono, Sapto Choi, Chang Geun Kim, Hyun-Woo |
author_sort | Alam, Md. Jobaidul |
collection | PubMed |
description | The complete mitochondrial genome of Silurus soldatovi firstly collected from a native Korean river was determined by the bioinformatics assembly of the next-generation sequencing (NGS) reads. The circular mitogenome was 16,525 bp in length which harbored canonical 13 protein-coding genes, 22 tRNAs, and 2 rRNAs, which was identical to those of family Siluridae. Twenty-eight genes were located on H strand, whereas the remaining nine genes were on L strand. Except for COX1 gene (GTG), other 12 protein-coding genes were predicted typical start codons (ATG). Among the currently known mitogenome sequences, S. soldatovi showed highest identity (99.38%) to the Chinese haplotype of S. soldatovi (NC022723) followed by the Chinese haplotype of Silurus asotus (JX087351). Interestingly, intraspecies variations of S. asotus are higher than those of interspecies and further study should be made to elucidate the evolutional relationship between two Silurus species. |
format | Online Article Text |
id | pubmed-7707740 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77077402020-12-22 Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river Alam, Md. Jobaidul Khalil, Mahmoud Aboalyamin Soliman Kim, Kyung Su Andriyono, Sapto Choi, Chang Geun Kim, Hyun-Woo Mitochondrial DNA B Resour Mitogenome Announcement The complete mitochondrial genome of Silurus soldatovi firstly collected from a native Korean river was determined by the bioinformatics assembly of the next-generation sequencing (NGS) reads. The circular mitogenome was 16,525 bp in length which harbored canonical 13 protein-coding genes, 22 tRNAs, and 2 rRNAs, which was identical to those of family Siluridae. Twenty-eight genes were located on H strand, whereas the remaining nine genes were on L strand. Except for COX1 gene (GTG), other 12 protein-coding genes were predicted typical start codons (ATG). Among the currently known mitogenome sequences, S. soldatovi showed highest identity (99.38%) to the Chinese haplotype of S. soldatovi (NC022723) followed by the Chinese haplotype of Silurus asotus (JX087351). Interestingly, intraspecies variations of S. asotus are higher than those of interspecies and further study should be made to elucidate the evolutional relationship between two Silurus species. Taylor & Francis 2019-11-08 /pmc/articles/PMC7707740/ /pubmed/33366235 http://dx.doi.org/10.1080/23802359.2019.1687347 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Alam, Md. Jobaidul Khalil, Mahmoud Aboalyamin Soliman Kim, Kyung Su Andriyono, Sapto Choi, Chang Geun Kim, Hyun-Woo Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river |
title | Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river |
title_full | Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river |
title_fullStr | Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river |
title_full_unstemmed | Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river |
title_short | Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river |
title_sort | characterization of the complete mitochondrial genome of silurus soldatovi in korean river |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707740/ https://www.ncbi.nlm.nih.gov/pubmed/33366235 http://dx.doi.org/10.1080/23802359.2019.1687347 |
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