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Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river

The complete mitochondrial genome of Silurus soldatovi firstly collected from a native Korean river was determined by the bioinformatics assembly of the next-generation sequencing (NGS) reads. The circular mitogenome was 16,525 bp in length which harbored canonical 13 protein-coding genes, 22 tRNAs,...

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Autores principales: Alam, Md. Jobaidul, Khalil, Mahmoud Aboalyamin Soliman, Kim, Kyung Su, Andriyono, Sapto, Choi, Chang Geun, Kim, Hyun-Woo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707740/
https://www.ncbi.nlm.nih.gov/pubmed/33366235
http://dx.doi.org/10.1080/23802359.2019.1687347
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author Alam, Md. Jobaidul
Khalil, Mahmoud Aboalyamin Soliman
Kim, Kyung Su
Andriyono, Sapto
Choi, Chang Geun
Kim, Hyun-Woo
author_facet Alam, Md. Jobaidul
Khalil, Mahmoud Aboalyamin Soliman
Kim, Kyung Su
Andriyono, Sapto
Choi, Chang Geun
Kim, Hyun-Woo
author_sort Alam, Md. Jobaidul
collection PubMed
description The complete mitochondrial genome of Silurus soldatovi firstly collected from a native Korean river was determined by the bioinformatics assembly of the next-generation sequencing (NGS) reads. The circular mitogenome was 16,525 bp in length which harbored canonical 13 protein-coding genes, 22 tRNAs, and 2 rRNAs, which was identical to those of family Siluridae. Twenty-eight genes were located on H strand, whereas the remaining nine genes were on L strand. Except for COX1 gene (GTG), other 12 protein-coding genes were predicted typical start codons (ATG). Among the currently known mitogenome sequences, S. soldatovi showed highest identity (99.38%) to the Chinese haplotype of S. soldatovi (NC022723) followed by the Chinese haplotype of Silurus asotus (JX087351). Interestingly, intraspecies variations of S. asotus are higher than those of interspecies and further study should be made to elucidate the evolutional relationship between two Silurus species.
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spelling pubmed-77077402020-12-22 Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river Alam, Md. Jobaidul Khalil, Mahmoud Aboalyamin Soliman Kim, Kyung Su Andriyono, Sapto Choi, Chang Geun Kim, Hyun-Woo Mitochondrial DNA B Resour Mitogenome Announcement The complete mitochondrial genome of Silurus soldatovi firstly collected from a native Korean river was determined by the bioinformatics assembly of the next-generation sequencing (NGS) reads. The circular mitogenome was 16,525 bp in length which harbored canonical 13 protein-coding genes, 22 tRNAs, and 2 rRNAs, which was identical to those of family Siluridae. Twenty-eight genes were located on H strand, whereas the remaining nine genes were on L strand. Except for COX1 gene (GTG), other 12 protein-coding genes were predicted typical start codons (ATG). Among the currently known mitogenome sequences, S. soldatovi showed highest identity (99.38%) to the Chinese haplotype of S. soldatovi (NC022723) followed by the Chinese haplotype of Silurus asotus (JX087351). Interestingly, intraspecies variations of S. asotus are higher than those of interspecies and further study should be made to elucidate the evolutional relationship between two Silurus species. Taylor & Francis 2019-11-08 /pmc/articles/PMC7707740/ /pubmed/33366235 http://dx.doi.org/10.1080/23802359.2019.1687347 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Alam, Md. Jobaidul
Khalil, Mahmoud Aboalyamin Soliman
Kim, Kyung Su
Andriyono, Sapto
Choi, Chang Geun
Kim, Hyun-Woo
Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river
title Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river
title_full Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river
title_fullStr Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river
title_full_unstemmed Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river
title_short Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river
title_sort characterization of the complete mitochondrial genome of silurus soldatovi in korean river
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707740/
https://www.ncbi.nlm.nih.gov/pubmed/33366235
http://dx.doi.org/10.1080/23802359.2019.1687347
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