The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female

The chloroplast (cp) genome sequence of a gynodioecious Satyrium ciliatum female type has been characterized using Illumina pair-end sequencing. The complete cp genome was 154,418 bp in length, containing a large single copy region (LSC) of 83,475 bp and a small single copy region (SSC) of 17,513 bp...

Descripción completa

Detalles Bibliográficos
Autores principales: Ma, Xiaokai, Lin, Han, Chen, Yanqiong, Lan, Siren, Ming, Ray
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707742/
https://www.ncbi.nlm.nih.gov/pubmed/33366230
http://dx.doi.org/10.1080/23802359.2019.1687359
_version_ 1783617417902030848
author Ma, Xiaokai
Lin, Han
Chen, Yanqiong
Lan, Siren
Ming, Ray
author_facet Ma, Xiaokai
Lin, Han
Chen, Yanqiong
Lan, Siren
Ming, Ray
author_sort Ma, Xiaokai
collection PubMed
description The chloroplast (cp) genome sequence of a gynodioecious Satyrium ciliatum female type has been characterized using Illumina pair-end sequencing. The complete cp genome was 154,418 bp in length, containing a large single copy region (LSC) of 83,475 bp and a small single copy region (SSC) of 17,513 bp, which were separated by a pair of 26,715 bp inverted repeat regions (IRs). The genome contained 132 genes, with 113 unique genes, including 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The overall GC content is 37.18% with the values of the LSC, SSC, and IR regions are 34.90%, 30.15%, and 43.06%, respectively. Phylogenetic analysis suggested that the S. ciliatum is close to Platanthera japonica (MG925368) in subfamily Orchidoideae.
format Online
Article
Text
id pubmed-7707742
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77077422020-12-22 The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female Ma, Xiaokai Lin, Han Chen, Yanqiong Lan, Siren Ming, Ray Mitochondrial DNA B Resour Mitogenome Announcement The chloroplast (cp) genome sequence of a gynodioecious Satyrium ciliatum female type has been characterized using Illumina pair-end sequencing. The complete cp genome was 154,418 bp in length, containing a large single copy region (LSC) of 83,475 bp and a small single copy region (SSC) of 17,513 bp, which were separated by a pair of 26,715 bp inverted repeat regions (IRs). The genome contained 132 genes, with 113 unique genes, including 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The overall GC content is 37.18% with the values of the LSC, SSC, and IR regions are 34.90%, 30.15%, and 43.06%, respectively. Phylogenetic analysis suggested that the S. ciliatum is close to Platanthera japonica (MG925368) in subfamily Orchidoideae. Taylor & Francis 2019-11-08 /pmc/articles/PMC7707742/ /pubmed/33366230 http://dx.doi.org/10.1080/23802359.2019.1687359 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Ma, Xiaokai
Lin, Han
Chen, Yanqiong
Lan, Siren
Ming, Ray
The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female
title The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female
title_full The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female
title_fullStr The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female
title_full_unstemmed The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female
title_short The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female
title_sort complete chloroplast genome of a gynodioecious deciduous orchid satyrium ciliatum (orchidaceae) female
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707742/
https://www.ncbi.nlm.nih.gov/pubmed/33366230
http://dx.doi.org/10.1080/23802359.2019.1687359
work_keys_str_mv AT maxiaokai thecompletechloroplastgenomeofagynodioeciousdeciduousorchidsatyriumciliatumorchidaceaefemale
AT linhan thecompletechloroplastgenomeofagynodioeciousdeciduousorchidsatyriumciliatumorchidaceaefemale
AT chenyanqiong thecompletechloroplastgenomeofagynodioeciousdeciduousorchidsatyriumciliatumorchidaceaefemale
AT lansiren thecompletechloroplastgenomeofagynodioeciousdeciduousorchidsatyriumciliatumorchidaceaefemale
AT mingray thecompletechloroplastgenomeofagynodioeciousdeciduousorchidsatyriumciliatumorchidaceaefemale
AT maxiaokai completechloroplastgenomeofagynodioeciousdeciduousorchidsatyriumciliatumorchidaceaefemale
AT linhan completechloroplastgenomeofagynodioeciousdeciduousorchidsatyriumciliatumorchidaceaefemale
AT chenyanqiong completechloroplastgenomeofagynodioeciousdeciduousorchidsatyriumciliatumorchidaceaefemale
AT lansiren completechloroplastgenomeofagynodioeciousdeciduousorchidsatyriumciliatumorchidaceaefemale
AT mingray completechloroplastgenomeofagynodioeciousdeciduousorchidsatyriumciliatumorchidaceaefemale

Ejemplares similares