Cargando…

The complete chloroplast genome sequence of Rheum tanguticum, an endangered Chinese medicinal plant (Polygonaceae)

Rheum tanguticum is a valuable medicinal plant endemic to the Qinghai-Tibetan Plateau. It has been listed classified under the IUCN Red List categories of Vulnerable due to the low reproductive rate and heavy exploitation. In this study, the complete chloroplast (cp) genome of R. tanguticum has been...

Descripción completa

Detalles Bibliográficos
Autores principales: Huo, Xiaowei, Wei, Hao, Gao, Jing, Yan, Yonggang, Zhang, Gang, Liu, Mengmeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707752/
https://www.ncbi.nlm.nih.gov/pubmed/33366315
http://dx.doi.org/10.1080/23802359.2019.1688722
_version_ 1783617420202606592
author Huo, Xiaowei
Wei, Hao
Gao, Jing
Yan, Yonggang
Zhang, Gang
Liu, Mengmeng
author_facet Huo, Xiaowei
Wei, Hao
Gao, Jing
Yan, Yonggang
Zhang, Gang
Liu, Mengmeng
author_sort Huo, Xiaowei
collection PubMed
description Rheum tanguticum is a valuable medicinal plant endemic to the Qinghai-Tibetan Plateau. It has been listed classified under the IUCN Red List categories of Vulnerable due to the low reproductive rate and heavy exploitation. In this study, the complete chloroplast (cp) genome of R. tanguticum has been assembled using data from the whole-genome Illumina sequencing. The cp genome is 161,515 bp in size and contains two inverted repeat regions of 30,823 bp each, which is separated by a large single-copy region of 86,675 bp and a small single-copy region of 13,194 bp. The cp genome contains 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis revealed that the cp genome of R. tanguticum was closely related to that of the R. palmatum.
format Online
Article
Text
id pubmed-7707752
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77077522020-12-22 The complete chloroplast genome sequence of Rheum tanguticum, an endangered Chinese medicinal plant (Polygonaceae) Huo, Xiaowei Wei, Hao Gao, Jing Yan, Yonggang Zhang, Gang Liu, Mengmeng Mitochondrial DNA B Resour Mitogenome Announcement Rheum tanguticum is a valuable medicinal plant endemic to the Qinghai-Tibetan Plateau. It has been listed classified under the IUCN Red List categories of Vulnerable due to the low reproductive rate and heavy exploitation. In this study, the complete chloroplast (cp) genome of R. tanguticum has been assembled using data from the whole-genome Illumina sequencing. The cp genome is 161,515 bp in size and contains two inverted repeat regions of 30,823 bp each, which is separated by a large single-copy region of 86,675 bp and a small single-copy region of 13,194 bp. The cp genome contains 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis revealed that the cp genome of R. tanguticum was closely related to that of the R. palmatum. Taylor & Francis 2019-11-13 /pmc/articles/PMC7707752/ /pubmed/33366315 http://dx.doi.org/10.1080/23802359.2019.1688722 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Huo, Xiaowei
Wei, Hao
Gao, Jing
Yan, Yonggang
Zhang, Gang
Liu, Mengmeng
The complete chloroplast genome sequence of Rheum tanguticum, an endangered Chinese medicinal plant (Polygonaceae)
title The complete chloroplast genome sequence of Rheum tanguticum, an endangered Chinese medicinal plant (Polygonaceae)
title_full The complete chloroplast genome sequence of Rheum tanguticum, an endangered Chinese medicinal plant (Polygonaceae)
title_fullStr The complete chloroplast genome sequence of Rheum tanguticum, an endangered Chinese medicinal plant (Polygonaceae)
title_full_unstemmed The complete chloroplast genome sequence of Rheum tanguticum, an endangered Chinese medicinal plant (Polygonaceae)
title_short The complete chloroplast genome sequence of Rheum tanguticum, an endangered Chinese medicinal plant (Polygonaceae)
title_sort complete chloroplast genome sequence of rheum tanguticum, an endangered chinese medicinal plant (polygonaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707752/
https://www.ncbi.nlm.nih.gov/pubmed/33366315
http://dx.doi.org/10.1080/23802359.2019.1688722
work_keys_str_mv AT huoxiaowei thecompletechloroplastgenomesequenceofrheumtanguticumanendangeredchinesemedicinalplantpolygonaceae
AT weihao thecompletechloroplastgenomesequenceofrheumtanguticumanendangeredchinesemedicinalplantpolygonaceae
AT gaojing thecompletechloroplastgenomesequenceofrheumtanguticumanendangeredchinesemedicinalplantpolygonaceae
AT yanyonggang thecompletechloroplastgenomesequenceofrheumtanguticumanendangeredchinesemedicinalplantpolygonaceae
AT zhanggang thecompletechloroplastgenomesequenceofrheumtanguticumanendangeredchinesemedicinalplantpolygonaceae
AT liumengmeng thecompletechloroplastgenomesequenceofrheumtanguticumanendangeredchinesemedicinalplantpolygonaceae
AT huoxiaowei completechloroplastgenomesequenceofrheumtanguticumanendangeredchinesemedicinalplantpolygonaceae
AT weihao completechloroplastgenomesequenceofrheumtanguticumanendangeredchinesemedicinalplantpolygonaceae
AT gaojing completechloroplastgenomesequenceofrheumtanguticumanendangeredchinesemedicinalplantpolygonaceae
AT yanyonggang completechloroplastgenomesequenceofrheumtanguticumanendangeredchinesemedicinalplantpolygonaceae
AT zhanggang completechloroplastgenomesequenceofrheumtanguticumanendangeredchinesemedicinalplantpolygonaceae
AT liumengmeng completechloroplastgenomesequenceofrheumtanguticumanendangeredchinesemedicinalplantpolygonaceae