Cargando…
The complete chloroplast genome sequence of Blastus pauciflorus (Melastomataceae)
Blastus pauciflorus, a shrub endemic to Hong Kong and Guangdong, south China, growing on low-altitude hillsides, under the forest. The species is controversial in classification. Herein, we report the complete chloroplast genome sequence assembled from Illumina pair-end sequencing data, with aims to...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707767/ https://www.ncbi.nlm.nih.gov/pubmed/33366219 http://dx.doi.org/10.1080/23802359.2019.1687035 |
_version_ | 1783617423904079872 |
---|---|
author | Wen, Zhen Ying Zeng, Si Jin Han, Wenchao Chen, Bin Peng, Dong Hui |
author_facet | Wen, Zhen Ying Zeng, Si Jin Han, Wenchao Chen, Bin Peng, Dong Hui |
author_sort | Wen, Zhen Ying |
collection | PubMed |
description | Blastus pauciflorus, a shrub endemic to Hong Kong and Guangdong, south China, growing on low-altitude hillsides, under the forest. The species is controversial in classification. Herein, we report the complete chloroplast genome sequence assembled from Illumina pair-end sequencing data, with aims to resolve its relationship with the related species. The complete chloroplast genome was 155,983 bp in length, includes two inverted repeat regions (IRs) of 26,716 bp each, which were separated by a large single copy region (LSC) 86,101 bp and a small single copy region (SSC) 16,450 bp. The chloroplast genome contained 129 genes, including 82 protein-coding genes, 2 pseudogenes, 37 tRNA genes and 8 rRNA genes. The overall GC content in the chloroplast genome of B. pauciflorus was 37.0%. Phylogenetic analysis showed that B. pauciflorus is closed to B. cochinchinensis. |
format | Online Article Text |
id | pubmed-7707767 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77077672020-12-22 The complete chloroplast genome sequence of Blastus pauciflorus (Melastomataceae) Wen, Zhen Ying Zeng, Si Jin Han, Wenchao Chen, Bin Peng, Dong Hui Mitochondrial DNA B Resour Mitogenome Announcement Blastus pauciflorus, a shrub endemic to Hong Kong and Guangdong, south China, growing on low-altitude hillsides, under the forest. The species is controversial in classification. Herein, we report the complete chloroplast genome sequence assembled from Illumina pair-end sequencing data, with aims to resolve its relationship with the related species. The complete chloroplast genome was 155,983 bp in length, includes two inverted repeat regions (IRs) of 26,716 bp each, which were separated by a large single copy region (LSC) 86,101 bp and a small single copy region (SSC) 16,450 bp. The chloroplast genome contained 129 genes, including 82 protein-coding genes, 2 pseudogenes, 37 tRNA genes and 8 rRNA genes. The overall GC content in the chloroplast genome of B. pauciflorus was 37.0%. Phylogenetic analysis showed that B. pauciflorus is closed to B. cochinchinensis. Taylor & Francis 2019-11-06 /pmc/articles/PMC7707767/ /pubmed/33366219 http://dx.doi.org/10.1080/23802359.2019.1687035 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Wen, Zhen Ying Zeng, Si Jin Han, Wenchao Chen, Bin Peng, Dong Hui The complete chloroplast genome sequence of Blastus pauciflorus (Melastomataceae) |
title | The complete chloroplast genome sequence of Blastus pauciflorus (Melastomataceae) |
title_full | The complete chloroplast genome sequence of Blastus pauciflorus (Melastomataceae) |
title_fullStr | The complete chloroplast genome sequence of Blastus pauciflorus (Melastomataceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Blastus pauciflorus (Melastomataceae) |
title_short | The complete chloroplast genome sequence of Blastus pauciflorus (Melastomataceae) |
title_sort | complete chloroplast genome sequence of blastus pauciflorus (melastomataceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707767/ https://www.ncbi.nlm.nih.gov/pubmed/33366219 http://dx.doi.org/10.1080/23802359.2019.1687035 |
work_keys_str_mv | AT wenzhenying thecompletechloroplastgenomesequenceofblastuspauciflorusmelastomataceae AT zengsijin thecompletechloroplastgenomesequenceofblastuspauciflorusmelastomataceae AT hanwenchao thecompletechloroplastgenomesequenceofblastuspauciflorusmelastomataceae AT chenbin thecompletechloroplastgenomesequenceofblastuspauciflorusmelastomataceae AT pengdonghui thecompletechloroplastgenomesequenceofblastuspauciflorusmelastomataceae AT wenzhenying completechloroplastgenomesequenceofblastuspauciflorusmelastomataceae AT zengsijin completechloroplastgenomesequenceofblastuspauciflorusmelastomataceae AT hanwenchao completechloroplastgenomesequenceofblastuspauciflorusmelastomataceae AT chenbin completechloroplastgenomesequenceofblastuspauciflorusmelastomataceae AT pengdonghui completechloroplastgenomesequenceofblastuspauciflorusmelastomataceae |