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Complete chloroplast genome sequence of Mirabilis himalaica (Nyctaginaceae)

Mirabilis himalaica (Nyctaginaceae) is endemic to the Himalayas where it is used in traditional Tibetan folk medicine. In this study, we first presented the complete chloroplast genome of M. himalaica. Complete genome size of M. himalaica ranged from 154,348 to 154,388 bp. The length varied from 85,...

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Detalles Bibliográficos
Autores principales: Wang, Shuli, Cai, Chaonan, Ma, Hui, Li, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707768/
https://www.ncbi.nlm.nih.gov/pubmed/33366298
http://dx.doi.org/10.1080/23802359.2019.1688116
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author Wang, Shuli
Cai, Chaonan
Ma, Hui
Li, Jie
author_facet Wang, Shuli
Cai, Chaonan
Ma, Hui
Li, Jie
author_sort Wang, Shuli
collection PubMed
description Mirabilis himalaica (Nyctaginaceae) is endemic to the Himalayas where it is used in traditional Tibetan folk medicine. In this study, we first presented the complete chloroplast genome of M. himalaica. Complete genome size of M. himalaica ranged from 154,348 to 154,388 bp. The length varied from 85,808 to 85,845 bp in the (large single-copy) LSC region, from 17,935 to 17,938 bp in the (small single-copy) SSC region, and from 25,302 to 25,303 bp in the inverted repeat (IR) region. The overall GC contents of the chloroplast genome sequences were around 36%. Annotation analysis revealed a total of 112 genes, including 78 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The phylogenetic analysis with three M. himalaica samples and five other Nyctaginaceae species showed that Mirabilis including two species was clustered with high bootstrap support. The complete chloroplast genome sequences obtained in this study will provide valuable data for wider studies into the phylogenetics and conservation biology of M. himalaica.
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spelling pubmed-77077682020-12-22 Complete chloroplast genome sequence of Mirabilis himalaica (Nyctaginaceae) Wang, Shuli Cai, Chaonan Ma, Hui Li, Jie Mitochondrial DNA B Resour Mitogenome Announcement Mirabilis himalaica (Nyctaginaceae) is endemic to the Himalayas where it is used in traditional Tibetan folk medicine. In this study, we first presented the complete chloroplast genome of M. himalaica. Complete genome size of M. himalaica ranged from 154,348 to 154,388 bp. The length varied from 85,808 to 85,845 bp in the (large single-copy) LSC region, from 17,935 to 17,938 bp in the (small single-copy) SSC region, and from 25,302 to 25,303 bp in the inverted repeat (IR) region. The overall GC contents of the chloroplast genome sequences were around 36%. Annotation analysis revealed a total of 112 genes, including 78 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The phylogenetic analysis with three M. himalaica samples and five other Nyctaginaceae species showed that Mirabilis including two species was clustered with high bootstrap support. The complete chloroplast genome sequences obtained in this study will provide valuable data for wider studies into the phylogenetics and conservation biology of M. himalaica. Taylor & Francis 2019-11-13 /pmc/articles/PMC7707768/ /pubmed/33366298 http://dx.doi.org/10.1080/23802359.2019.1688116 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Wang, Shuli
Cai, Chaonan
Ma, Hui
Li, Jie
Complete chloroplast genome sequence of Mirabilis himalaica (Nyctaginaceae)
title Complete chloroplast genome sequence of Mirabilis himalaica (Nyctaginaceae)
title_full Complete chloroplast genome sequence of Mirabilis himalaica (Nyctaginaceae)
title_fullStr Complete chloroplast genome sequence of Mirabilis himalaica (Nyctaginaceae)
title_full_unstemmed Complete chloroplast genome sequence of Mirabilis himalaica (Nyctaginaceae)
title_short Complete chloroplast genome sequence of Mirabilis himalaica (Nyctaginaceae)
title_sort complete chloroplast genome sequence of mirabilis himalaica (nyctaginaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707768/
https://www.ncbi.nlm.nih.gov/pubmed/33366298
http://dx.doi.org/10.1080/23802359.2019.1688116
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