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The complete chloroplast genome sequence of Populus tremuloides (Salicaceae)
The complete chloroplast genome sequence of Populus tremuloides was characterized from Illumina pair-end sequencing. The chloroplast genome of P. tremuloides was 155,816 bp in length, containing a large single-copy region (LSC) of 85,804 bp, a small single-copy region (SSC) of 16,489 bp, and two inv...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707770/ https://www.ncbi.nlm.nih.gov/pubmed/33366252 http://dx.doi.org/10.1080/23802359.2019.1688121 |
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author | Li, Ang Hou, Zhe |
author_facet | Li, Ang Hou, Zhe |
author_sort | Li, Ang |
collection | PubMed |
description | The complete chloroplast genome sequence of Populus tremuloides was characterized from Illumina pair-end sequencing. The chloroplast genome of P. tremuloides was 155,816 bp in length, containing a large single-copy region (LSC) of 85,804 bp, a small single-copy region (SSC) of 16,489 bp, and two inverted repeat (IR) regions of 26,962 bp. The overall GC content is 36.71%, while the correponding values of the LSC, SSC, and IR regions are 64.9%, 69.2%, and 60.3%, respectively. The genome contains 167 complete genes, including 86 protein-coding genes (77 protein-coding gene species), 73 tRNA genes (29 tRNA species) and 8 rRNA genes(4 rRNA species). The Neighbour-joining phylogenetic analysis showed that P. tremuloides and Populus tremula clustered together as sisters to other Populus species. |
format | Online Article Text |
id | pubmed-7707770 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77077702020-12-22 The complete chloroplast genome sequence of Populus tremuloides (Salicaceae) Li, Ang Hou, Zhe Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome sequence of Populus tremuloides was characterized from Illumina pair-end sequencing. The chloroplast genome of P. tremuloides was 155,816 bp in length, containing a large single-copy region (LSC) of 85,804 bp, a small single-copy region (SSC) of 16,489 bp, and two inverted repeat (IR) regions of 26,962 bp. The overall GC content is 36.71%, while the correponding values of the LSC, SSC, and IR regions are 64.9%, 69.2%, and 60.3%, respectively. The genome contains 167 complete genes, including 86 protein-coding genes (77 protein-coding gene species), 73 tRNA genes (29 tRNA species) and 8 rRNA genes(4 rRNA species). The Neighbour-joining phylogenetic analysis showed that P. tremuloides and Populus tremula clustered together as sisters to other Populus species. Taylor & Francis 2019-11-08 /pmc/articles/PMC7707770/ /pubmed/33366252 http://dx.doi.org/10.1080/23802359.2019.1688121 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Li, Ang Hou, Zhe The complete chloroplast genome sequence of Populus tremuloides (Salicaceae) |
title | The complete chloroplast genome sequence of Populus tremuloides (Salicaceae) |
title_full | The complete chloroplast genome sequence of Populus tremuloides (Salicaceae) |
title_fullStr | The complete chloroplast genome sequence of Populus tremuloides (Salicaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Populus tremuloides (Salicaceae) |
title_short | The complete chloroplast genome sequence of Populus tremuloides (Salicaceae) |
title_sort | complete chloroplast genome sequence of populus tremuloides (salicaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707770/ https://www.ncbi.nlm.nih.gov/pubmed/33366252 http://dx.doi.org/10.1080/23802359.2019.1688121 |
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