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Complete chloroplast genome sequence of Gynostemma pentaphyllum (Cucurbitaceae), a perennial medicinal herb
Gynostemma pentaphyllum (Cucurbitaceae) is a perennial medicinal herb widely distributed in China. It’s well known for its medicinal values due to contains important medicinal components gypenosides. Here, we first report and characterize its complete chloroplast genome based on Illumina paired-end...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707782/ https://www.ncbi.nlm.nih.gov/pubmed/33366273 http://dx.doi.org/10.1080/23802359.2019.1688726 |
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author | Shi, Yancai Zou, Rong Liu, Bingbing |
author_facet | Shi, Yancai Zou, Rong Liu, Bingbing |
author_sort | Shi, Yancai |
collection | PubMed |
description | Gynostemma pentaphyllum (Cucurbitaceae) is a perennial medicinal herb widely distributed in China. It’s well known for its medicinal values due to contains important medicinal components gypenosides. Here, we first report and characterize its complete chloroplast genome based on Illumina paired-end sequencing data. The complete plastid genome was 154,457 bp, which contained inverted repeats (IR) of 25,603 bp separated by a large single-copy (LSC) and a small single copy (SSC) of 84,998 bp and 18,253 bp, respectively. The cpDNA contains 132 genes, comprising 81 protein-coding genes, 37 tRNA genes, 8 rRNA genes and six processed pseudogenes. The overall GC content of the plastome is 37.1%. The phylogenetic analysis of 17 selected chloroplast genomes demonstrated that G. pentaphyllum is closely related to the congeneric G. compressum. |
format | Online Article Text |
id | pubmed-7707782 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77077822020-12-22 Complete chloroplast genome sequence of Gynostemma pentaphyllum (Cucurbitaceae), a perennial medicinal herb Shi, Yancai Zou, Rong Liu, Bingbing Mitochondrial DNA B Resour Mitogenome Announcements Gynostemma pentaphyllum (Cucurbitaceae) is a perennial medicinal herb widely distributed in China. It’s well known for its medicinal values due to contains important medicinal components gypenosides. Here, we first report and characterize its complete chloroplast genome based on Illumina paired-end sequencing data. The complete plastid genome was 154,457 bp, which contained inverted repeats (IR) of 25,603 bp separated by a large single-copy (LSC) and a small single copy (SSC) of 84,998 bp and 18,253 bp, respectively. The cpDNA contains 132 genes, comprising 81 protein-coding genes, 37 tRNA genes, 8 rRNA genes and six processed pseudogenes. The overall GC content of the plastome is 37.1%. The phylogenetic analysis of 17 selected chloroplast genomes demonstrated that G. pentaphyllum is closely related to the congeneric G. compressum. Taylor & Francis 2019-11-12 /pmc/articles/PMC7707782/ /pubmed/33366273 http://dx.doi.org/10.1080/23802359.2019.1688726 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcements Shi, Yancai Zou, Rong Liu, Bingbing Complete chloroplast genome sequence of Gynostemma pentaphyllum (Cucurbitaceae), a perennial medicinal herb |
title | Complete chloroplast genome sequence of Gynostemma pentaphyllum (Cucurbitaceae), a perennial medicinal herb |
title_full | Complete chloroplast genome sequence of Gynostemma pentaphyllum (Cucurbitaceae), a perennial medicinal herb |
title_fullStr | Complete chloroplast genome sequence of Gynostemma pentaphyllum (Cucurbitaceae), a perennial medicinal herb |
title_full_unstemmed | Complete chloroplast genome sequence of Gynostemma pentaphyllum (Cucurbitaceae), a perennial medicinal herb |
title_short | Complete chloroplast genome sequence of Gynostemma pentaphyllum (Cucurbitaceae), a perennial medicinal herb |
title_sort | complete chloroplast genome sequence of gynostemma pentaphyllum (cucurbitaceae), a perennial medicinal herb |
topic | Mitogenome Announcements |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707782/ https://www.ncbi.nlm.nih.gov/pubmed/33366273 http://dx.doi.org/10.1080/23802359.2019.1688726 |
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