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The complete chloroplast genome of Changium smyrnioides Wolff

Changium smyrnioides Wolff, which could only be found in Eastern China, is a monotypic species of the genus Changium Wolff. In this study, the complete chloroplast genome sequence of C. smyrnioides was assembled and characterized by the 42.33 M high-throughput sequencing data. The chloroplast genome...

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Autores principales: Bao, Zhenzhen, Zhu, Ziyan, Gai, Yanan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707784/
https://www.ncbi.nlm.nih.gov/pubmed/33366328
http://dx.doi.org/10.1080/23802359.2019.1688715
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author Bao, Zhenzhen
Zhu, Ziyan
Gai, Yanan
author_facet Bao, Zhenzhen
Zhu, Ziyan
Gai, Yanan
author_sort Bao, Zhenzhen
collection PubMed
description Changium smyrnioides Wolff, which could only be found in Eastern China, is a monotypic species of the genus Changium Wolff. In this study, the complete chloroplast genome sequence of C. smyrnioides was assembled and characterized by the 42.33 M high-throughput sequencing data. The chloroplast genome was 155,221 bp in length, consisting of large single-copy (LSC) and small single-copy (SSC) regions of 84,793 bp and 17,828 bp, respectively, which were separated by a pair of 26,300 bp inverted repeat (IR) regions. The genome is predicted to contain 131 genes, including 8 rRNA genes, 37 tRNA genes, and 86 protein-coding genes. The overall GC content of the genome is 37.7%. A phylogenetic tree reconstructed by 37 chloroplast genomes reveals that Chuanminshen violaceum is mostly related species to C. smyrnioides. The work reported here is the first complete chloroplast genome of C. smyrnioides which may provide useful information to the evolution of Changium genus.
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spelling pubmed-77077842020-12-22 The complete chloroplast genome of Changium smyrnioides Wolff Bao, Zhenzhen Zhu, Ziyan Gai, Yanan Mitochondrial DNA B Resour Mitogenome Announcement Changium smyrnioides Wolff, which could only be found in Eastern China, is a monotypic species of the genus Changium Wolff. In this study, the complete chloroplast genome sequence of C. smyrnioides was assembled and characterized by the 42.33 M high-throughput sequencing data. The chloroplast genome was 155,221 bp in length, consisting of large single-copy (LSC) and small single-copy (SSC) regions of 84,793 bp and 17,828 bp, respectively, which were separated by a pair of 26,300 bp inverted repeat (IR) regions. The genome is predicted to contain 131 genes, including 8 rRNA genes, 37 tRNA genes, and 86 protein-coding genes. The overall GC content of the genome is 37.7%. A phylogenetic tree reconstructed by 37 chloroplast genomes reveals that Chuanminshen violaceum is mostly related species to C. smyrnioides. The work reported here is the first complete chloroplast genome of C. smyrnioides which may provide useful information to the evolution of Changium genus. Taylor & Francis 2019-11-18 /pmc/articles/PMC7707784/ /pubmed/33366328 http://dx.doi.org/10.1080/23802359.2019.1688715 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Bao, Zhenzhen
Zhu, Ziyan
Gai, Yanan
The complete chloroplast genome of Changium smyrnioides Wolff
title The complete chloroplast genome of Changium smyrnioides Wolff
title_full The complete chloroplast genome of Changium smyrnioides Wolff
title_fullStr The complete chloroplast genome of Changium smyrnioides Wolff
title_full_unstemmed The complete chloroplast genome of Changium smyrnioides Wolff
title_short The complete chloroplast genome of Changium smyrnioides Wolff
title_sort complete chloroplast genome of changium smyrnioides wolff
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707784/
https://www.ncbi.nlm.nih.gov/pubmed/33366328
http://dx.doi.org/10.1080/23802359.2019.1688715
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