The complete chloroplast genome of Firmiana danxiaensis, an endangered species endemic to Danxia landform in Southern China

We sequenced the complete chloroplast of Firmiana danxiaensis (Malvaceae), which is 161,253 bp in size and consists of a large single-copy region (LSC) of 90,142 bp and a short single copy region (SSC) of 20,067 bp. It was separated by two inverted repeats (IRs) regions of 25,522 bp for each. The GC...

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Detalles Bibliográficos
Autores principales: Lu, Qifeng, Luo, Wenhua, Huang, Zhihuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707807/
https://www.ncbi.nlm.nih.gov/pubmed/33366323
http://dx.doi.org/10.1080/23802359.2019.1689861
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author Lu, Qifeng
Luo, Wenhua
Huang, Zhihuan
author_facet Lu, Qifeng
Luo, Wenhua
Huang, Zhihuan
author_sort Lu, Qifeng
collection PubMed
description We sequenced the complete chloroplast of Firmiana danxiaensis (Malvaceae), which is 161,253 bp in size and consists of a large single-copy region (LSC) of 90,142 bp and a short single copy region (SSC) of 20,067 bp. It was separated by two inverted repeats (IRs) regions of 25,522 bp for each. The GC content of the whole genome, LSC, SSC, and IRs region was 36.87%, 34.68%, 31.24%, and 42.97%, respectively. The overall base content was A (31.07%), T (32.05%), C (18.80%), and G (18.08%). The genome contained 127 genes, including 82 protein-coding sequences, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis showed that F. danxiaensis is sister to F. simplex, and supported there was a close relationship among F. danxiaensis, F. simplex, and F. pulcherrima.
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spelling pubmed-77078072020-12-22 The complete chloroplast genome of Firmiana danxiaensis, an endangered species endemic to Danxia landform in Southern China Lu, Qifeng Luo, Wenhua Huang, Zhihuan Mitochondrial DNA B Resour Mitogenome Announcement We sequenced the complete chloroplast of Firmiana danxiaensis (Malvaceae), which is 161,253 bp in size and consists of a large single-copy region (LSC) of 90,142 bp and a short single copy region (SSC) of 20,067 bp. It was separated by two inverted repeats (IRs) regions of 25,522 bp for each. The GC content of the whole genome, LSC, SSC, and IRs region was 36.87%, 34.68%, 31.24%, and 42.97%, respectively. The overall base content was A (31.07%), T (32.05%), C (18.80%), and G (18.08%). The genome contained 127 genes, including 82 protein-coding sequences, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis showed that F. danxiaensis is sister to F. simplex, and supported there was a close relationship among F. danxiaensis, F. simplex, and F. pulcherrima. Taylor & Francis 2019-11-18 /pmc/articles/PMC7707807/ /pubmed/33366323 http://dx.doi.org/10.1080/23802359.2019.1689861 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Lu, Qifeng
Luo, Wenhua
Huang, Zhihuan
The complete chloroplast genome of Firmiana danxiaensis, an endangered species endemic to Danxia landform in Southern China
title The complete chloroplast genome of Firmiana danxiaensis, an endangered species endemic to Danxia landform in Southern China
title_full The complete chloroplast genome of Firmiana danxiaensis, an endangered species endemic to Danxia landform in Southern China
title_fullStr The complete chloroplast genome of Firmiana danxiaensis, an endangered species endemic to Danxia landform in Southern China
title_full_unstemmed The complete chloroplast genome of Firmiana danxiaensis, an endangered species endemic to Danxia landform in Southern China
title_short The complete chloroplast genome of Firmiana danxiaensis, an endangered species endemic to Danxia landform in Southern China
title_sort complete chloroplast genome of firmiana danxiaensis, an endangered species endemic to danxia landform in southern china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707807/
https://www.ncbi.nlm.nih.gov/pubmed/33366323
http://dx.doi.org/10.1080/23802359.2019.1689861
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