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The complete chloroplast genome sequence of Viscum coloratum (Viscaceae), a semiparasitic medicinal plant
Viscum coloratum (Viscaceae) is a kind of semiparasitic shrub used as medicinal plant. The complete chloroplast (cp) genome of V. coloratum was sequenced and characterized in this study. Length of total cp genome is 128,744 bp, which is constructed by four typical regions including a large single-co...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707847/ https://www.ncbi.nlm.nih.gov/pubmed/33365784 http://dx.doi.org/10.1080/23802359.2019.1660923 |
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author | Wei, Xueping Guo, Haojie Che, Peng Zhang, Bengang Liu, Haitao Qi, Yaodong |
author_facet | Wei, Xueping Guo, Haojie Che, Peng Zhang, Bengang Liu, Haitao Qi, Yaodong |
author_sort | Wei, Xueping |
collection | PubMed |
description | Viscum coloratum (Viscaceae) is a kind of semiparasitic shrub used as medicinal plant. The complete chloroplast (cp) genome of V. coloratum was sequenced and characterized in this study. Length of total cp genome is 128,744 bp, which is constructed by four typical regions including a large single-copy region (LSC, 73,684 bp), a small single-copy region (SSC, 8630 bp) and a pair of inverted-repeat regions (IRs, 23,215 bp). 100 unique genes are predicted including 68 protein-coding genes, 28 tRNA genes and four rRNA genes. Phylogenetic analysis were performed based on 30 shared genes of 12 species in Santalales using maximum likelihood method. The results showed a close relationship between V. coloratum and V. album. The complete cp genome of V. coloratum would provide valuable genetic resources for further study on phylogeny, population genetics and identification in Viscum. |
format | Online Article Text |
id | pubmed-7707847 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77078472020-12-22 The complete chloroplast genome sequence of Viscum coloratum (Viscaceae), a semiparasitic medicinal plant Wei, Xueping Guo, Haojie Che, Peng Zhang, Bengang Liu, Haitao Qi, Yaodong Mitochondrial DNA B Resour Mitogenome Announcement Viscum coloratum (Viscaceae) is a kind of semiparasitic shrub used as medicinal plant. The complete chloroplast (cp) genome of V. coloratum was sequenced and characterized in this study. Length of total cp genome is 128,744 bp, which is constructed by four typical regions including a large single-copy region (LSC, 73,684 bp), a small single-copy region (SSC, 8630 bp) and a pair of inverted-repeat regions (IRs, 23,215 bp). 100 unique genes are predicted including 68 protein-coding genes, 28 tRNA genes and four rRNA genes. Phylogenetic analysis were performed based on 30 shared genes of 12 species in Santalales using maximum likelihood method. The results showed a close relationship between V. coloratum and V. album. The complete cp genome of V. coloratum would provide valuable genetic resources for further study on phylogeny, population genetics and identification in Viscum. Taylor & Francis 2019-09-03 /pmc/articles/PMC7707847/ /pubmed/33365784 http://dx.doi.org/10.1080/23802359.2019.1660923 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Wei, Xueping Guo, Haojie Che, Peng Zhang, Bengang Liu, Haitao Qi, Yaodong The complete chloroplast genome sequence of Viscum coloratum (Viscaceae), a semiparasitic medicinal plant |
title | The complete chloroplast genome sequence of Viscum coloratum (Viscaceae), a semiparasitic medicinal plant |
title_full | The complete chloroplast genome sequence of Viscum coloratum (Viscaceae), a semiparasitic medicinal plant |
title_fullStr | The complete chloroplast genome sequence of Viscum coloratum (Viscaceae), a semiparasitic medicinal plant |
title_full_unstemmed | The complete chloroplast genome sequence of Viscum coloratum (Viscaceae), a semiparasitic medicinal plant |
title_short | The complete chloroplast genome sequence of Viscum coloratum (Viscaceae), a semiparasitic medicinal plant |
title_sort | complete chloroplast genome sequence of viscum coloratum (viscaceae), a semiparasitic medicinal plant |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707847/ https://www.ncbi.nlm.nih.gov/pubmed/33365784 http://dx.doi.org/10.1080/23802359.2019.1660923 |
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