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Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans
Watasenia scintillans, a sparkling enope squid, has bioluminescence organs to illuminate its body with its own luciferase activity. To clarify the molecular mechanism underlying its scintillation, we analysed high-throughput sequencing data acquired previously and obtained draft genome sequences acc...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7708342/ https://www.ncbi.nlm.nih.gov/pubmed/33098466 http://dx.doi.org/10.1007/s10126-020-10001-8 |
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author | Yoshida, Masa-aki Imoto, Junichi Kawai, Yuri Funahashi, Satomi Minei, Ryuhei Akizuki, Yuki Ogura, Atsushi Nakabayashi, Kazuhiko Yura, Kei Ikeo, Kazuho |
author_facet | Yoshida, Masa-aki Imoto, Junichi Kawai, Yuri Funahashi, Satomi Minei, Ryuhei Akizuki, Yuki Ogura, Atsushi Nakabayashi, Kazuhiko Yura, Kei Ikeo, Kazuho |
author_sort | Yoshida, Masa-aki |
collection | PubMed |
description | Watasenia scintillans, a sparkling enope squid, has bioluminescence organs to illuminate its body with its own luciferase activity. To clarify the molecular mechanism underlying its scintillation, we analysed high-throughput sequencing data acquired previously and obtained draft genome sequences accomplished with comparative genomic data among the cephalopods. The genome mapped by transcriptome data showed that (1) RNA editing contributed to transcriptome variation of lineage specific genes, such as W. scintillans luciferase, and (2) two types of luciferase enzymes were characterized with reasonable 3D models docked to a luciferin molecule. We report two different types of luciferase in one organism and possibly related to variety of colour types in the W. scintillans fluorescent organs. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10126-020-10001-8) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-7708342 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-77083422020-12-03 Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans Yoshida, Masa-aki Imoto, Junichi Kawai, Yuri Funahashi, Satomi Minei, Ryuhei Akizuki, Yuki Ogura, Atsushi Nakabayashi, Kazuhiko Yura, Kei Ikeo, Kazuho Mar Biotechnol (NY) Original Article Watasenia scintillans, a sparkling enope squid, has bioluminescence organs to illuminate its body with its own luciferase activity. To clarify the molecular mechanism underlying its scintillation, we analysed high-throughput sequencing data acquired previously and obtained draft genome sequences accomplished with comparative genomic data among the cephalopods. The genome mapped by transcriptome data showed that (1) RNA editing contributed to transcriptome variation of lineage specific genes, such as W. scintillans luciferase, and (2) two types of luciferase enzymes were characterized with reasonable 3D models docked to a luciferin molecule. We report two different types of luciferase in one organism and possibly related to variety of colour types in the W. scintillans fluorescent organs. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10126-020-10001-8) contains supplementary material, which is available to authorized users. Springer US 2020-10-24 2020 /pmc/articles/PMC7708342/ /pubmed/33098466 http://dx.doi.org/10.1007/s10126-020-10001-8 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Original Article Yoshida, Masa-aki Imoto, Junichi Kawai, Yuri Funahashi, Satomi Minei, Ryuhei Akizuki, Yuki Ogura, Atsushi Nakabayashi, Kazuhiko Yura, Kei Ikeo, Kazuho Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans |
title | Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans |
title_full | Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans |
title_fullStr | Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans |
title_full_unstemmed | Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans |
title_short | Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans |
title_sort | genomic and transcriptomic analyses of bioluminescence genes in the enope squid watasenia scintillans |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7708342/ https://www.ncbi.nlm.nih.gov/pubmed/33098466 http://dx.doi.org/10.1007/s10126-020-10001-8 |
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