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Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans

Watasenia scintillans, a sparkling enope squid, has bioluminescence organs to illuminate its body with its own luciferase activity. To clarify the molecular mechanism underlying its scintillation, we analysed high-throughput sequencing data acquired previously and obtained draft genome sequences acc...

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Autores principales: Yoshida, Masa-aki, Imoto, Junichi, Kawai, Yuri, Funahashi, Satomi, Minei, Ryuhei, Akizuki, Yuki, Ogura, Atsushi, Nakabayashi, Kazuhiko, Yura, Kei, Ikeo, Kazuho
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7708342/
https://www.ncbi.nlm.nih.gov/pubmed/33098466
http://dx.doi.org/10.1007/s10126-020-10001-8
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author Yoshida, Masa-aki
Imoto, Junichi
Kawai, Yuri
Funahashi, Satomi
Minei, Ryuhei
Akizuki, Yuki
Ogura, Atsushi
Nakabayashi, Kazuhiko
Yura, Kei
Ikeo, Kazuho
author_facet Yoshida, Masa-aki
Imoto, Junichi
Kawai, Yuri
Funahashi, Satomi
Minei, Ryuhei
Akizuki, Yuki
Ogura, Atsushi
Nakabayashi, Kazuhiko
Yura, Kei
Ikeo, Kazuho
author_sort Yoshida, Masa-aki
collection PubMed
description Watasenia scintillans, a sparkling enope squid, has bioluminescence organs to illuminate its body with its own luciferase activity. To clarify the molecular mechanism underlying its scintillation, we analysed high-throughput sequencing data acquired previously and obtained draft genome sequences accomplished with comparative genomic data among the cephalopods. The genome mapped by transcriptome data showed that (1) RNA editing contributed to transcriptome variation of lineage specific genes, such as W. scintillans luciferase, and (2) two types of luciferase enzymes were characterized with reasonable 3D models docked to a luciferin molecule. We report two different types of luciferase in one organism and possibly related to variety of colour types in the W. scintillans fluorescent organs. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10126-020-10001-8) contains supplementary material, which is available to authorized users.
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spelling pubmed-77083422020-12-03 Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans Yoshida, Masa-aki Imoto, Junichi Kawai, Yuri Funahashi, Satomi Minei, Ryuhei Akizuki, Yuki Ogura, Atsushi Nakabayashi, Kazuhiko Yura, Kei Ikeo, Kazuho Mar Biotechnol (NY) Original Article Watasenia scintillans, a sparkling enope squid, has bioluminescence organs to illuminate its body with its own luciferase activity. To clarify the molecular mechanism underlying its scintillation, we analysed high-throughput sequencing data acquired previously and obtained draft genome sequences accomplished with comparative genomic data among the cephalopods. The genome mapped by transcriptome data showed that (1) RNA editing contributed to transcriptome variation of lineage specific genes, such as W. scintillans luciferase, and (2) two types of luciferase enzymes were characterized with reasonable 3D models docked to a luciferin molecule. We report two different types of luciferase in one organism and possibly related to variety of colour types in the W. scintillans fluorescent organs. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10126-020-10001-8) contains supplementary material, which is available to authorized users. Springer US 2020-10-24 2020 /pmc/articles/PMC7708342/ /pubmed/33098466 http://dx.doi.org/10.1007/s10126-020-10001-8 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Original Article
Yoshida, Masa-aki
Imoto, Junichi
Kawai, Yuri
Funahashi, Satomi
Minei, Ryuhei
Akizuki, Yuki
Ogura, Atsushi
Nakabayashi, Kazuhiko
Yura, Kei
Ikeo, Kazuho
Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans
title Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans
title_full Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans
title_fullStr Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans
title_full_unstemmed Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans
title_short Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans
title_sort genomic and transcriptomic analyses of bioluminescence genes in the enope squid watasenia scintillans
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7708342/
https://www.ncbi.nlm.nih.gov/pubmed/33098466
http://dx.doi.org/10.1007/s10126-020-10001-8
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