Cargando…

Nomogram Personalizes and Visualizes the Overall Survival of Patients with Triple-Negative Breast Cancer Based on the Immune Genome

BACKGROUND: Triple-negative breast cancer (TNBC) is usually poorly differentiated, highly invasive, susceptible to distant metastasis, and less responsive to endocrine and targeted therapy. However, immunotherapy is a promising treatment for TNBC patients recently. METHODS: The prognostic value of i...

Descripción completa

Detalles Bibliográficos
Autores principales: Wang, Peipei, Fu, Yang, Chen, Yueyun, Li, Qing, Hong, Ye, Liu, Ting, Ding, Zhenyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7709499/
https://www.ncbi.nlm.nih.gov/pubmed/33299869
http://dx.doi.org/10.1155/2020/4029062
_version_ 1783617762765045760
author Wang, Peipei
Fu, Yang
Chen, Yueyun
Li, Qing
Hong, Ye
Liu, Ting
Ding, Zhenyu
author_facet Wang, Peipei
Fu, Yang
Chen, Yueyun
Li, Qing
Hong, Ye
Liu, Ting
Ding, Zhenyu
author_sort Wang, Peipei
collection PubMed
description BACKGROUND: Triple-negative breast cancer (TNBC) is usually poorly differentiated, highly invasive, susceptible to distant metastasis, and less responsive to endocrine and targeted therapy. However, immunotherapy is a promising treatment for TNBC patients recently. METHODS: The prognostic value of immune-related genes (IRGs) was explored by using RNA sequencing and microarray data of 123 and 107 TNBC patients from TCGA and GEO databases, respectively. RESULTS: In TCGA database, GO and KEGG pathway analysis of 119 differential IRGs indicated that they actively participate in the interaction of cytokines and receptors. A nomogram model constructed by the prognosis-related CCL25, IL29, TDGF3, GPR44, and GREM2 in the IRGs could personalize and visualize the 1-, 2-, 3-, 4-, and 5-year overall survival (OS) of TNBC patients. Moreover, TNBC patients could be defined as low-risk (risk score < 194) or high-risk (risk score ≥ 194) cohorts based on the risk score derived from the nomogram model. The results could be validated by the GSE58812 dataset. Furthermore, the risk score was an independent risk factor for TNBC patients (HR = 1.019, 95% CI 1.012-1.027, p < 0.001) and was positively related to stage (p = 0.017). Interestingly, the risk score could reflect the infiltration of B cells, CD4+ T cells, CD8+ T cells, dendritic cells, and neutrophils. CONCLUSION: These findings provided a reference for personalized OS prediction in TNBC patients and might be potential immune biomarkers for designing novel therapy.
format Online
Article
Text
id pubmed-7709499
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-77094992020-12-08 Nomogram Personalizes and Visualizes the Overall Survival of Patients with Triple-Negative Breast Cancer Based on the Immune Genome Wang, Peipei Fu, Yang Chen, Yueyun Li, Qing Hong, Ye Liu, Ting Ding, Zhenyu Biomed Res Int Research Article BACKGROUND: Triple-negative breast cancer (TNBC) is usually poorly differentiated, highly invasive, susceptible to distant metastasis, and less responsive to endocrine and targeted therapy. However, immunotherapy is a promising treatment for TNBC patients recently. METHODS: The prognostic value of immune-related genes (IRGs) was explored by using RNA sequencing and microarray data of 123 and 107 TNBC patients from TCGA and GEO databases, respectively. RESULTS: In TCGA database, GO and KEGG pathway analysis of 119 differential IRGs indicated that they actively participate in the interaction of cytokines and receptors. A nomogram model constructed by the prognosis-related CCL25, IL29, TDGF3, GPR44, and GREM2 in the IRGs could personalize and visualize the 1-, 2-, 3-, 4-, and 5-year overall survival (OS) of TNBC patients. Moreover, TNBC patients could be defined as low-risk (risk score < 194) or high-risk (risk score ≥ 194) cohorts based on the risk score derived from the nomogram model. The results could be validated by the GSE58812 dataset. Furthermore, the risk score was an independent risk factor for TNBC patients (HR = 1.019, 95% CI 1.012-1.027, p < 0.001) and was positively related to stage (p = 0.017). Interestingly, the risk score could reflect the infiltration of B cells, CD4+ T cells, CD8+ T cells, dendritic cells, and neutrophils. CONCLUSION: These findings provided a reference for personalized OS prediction in TNBC patients and might be potential immune biomarkers for designing novel therapy. Hindawi 2020-11-24 /pmc/articles/PMC7709499/ /pubmed/33299869 http://dx.doi.org/10.1155/2020/4029062 Text en Copyright © 2020 Peipei Wang et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Wang, Peipei
Fu, Yang
Chen, Yueyun
Li, Qing
Hong, Ye
Liu, Ting
Ding, Zhenyu
Nomogram Personalizes and Visualizes the Overall Survival of Patients with Triple-Negative Breast Cancer Based on the Immune Genome
title Nomogram Personalizes and Visualizes the Overall Survival of Patients with Triple-Negative Breast Cancer Based on the Immune Genome
title_full Nomogram Personalizes and Visualizes the Overall Survival of Patients with Triple-Negative Breast Cancer Based on the Immune Genome
title_fullStr Nomogram Personalizes and Visualizes the Overall Survival of Patients with Triple-Negative Breast Cancer Based on the Immune Genome
title_full_unstemmed Nomogram Personalizes and Visualizes the Overall Survival of Patients with Triple-Negative Breast Cancer Based on the Immune Genome
title_short Nomogram Personalizes and Visualizes the Overall Survival of Patients with Triple-Negative Breast Cancer Based on the Immune Genome
title_sort nomogram personalizes and visualizes the overall survival of patients with triple-negative breast cancer based on the immune genome
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7709499/
https://www.ncbi.nlm.nih.gov/pubmed/33299869
http://dx.doi.org/10.1155/2020/4029062
work_keys_str_mv AT wangpeipei nomogrampersonalizesandvisualizestheoverallsurvivalofpatientswithtriplenegativebreastcancerbasedontheimmunegenome
AT fuyang nomogrampersonalizesandvisualizestheoverallsurvivalofpatientswithtriplenegativebreastcancerbasedontheimmunegenome
AT chenyueyun nomogrampersonalizesandvisualizestheoverallsurvivalofpatientswithtriplenegativebreastcancerbasedontheimmunegenome
AT liqing nomogrampersonalizesandvisualizestheoverallsurvivalofpatientswithtriplenegativebreastcancerbasedontheimmunegenome
AT hongye nomogrampersonalizesandvisualizestheoverallsurvivalofpatientswithtriplenegativebreastcancerbasedontheimmunegenome
AT liuting nomogrampersonalizesandvisualizestheoverallsurvivalofpatientswithtriplenegativebreastcancerbasedontheimmunegenome
AT dingzhenyu nomogrampersonalizesandvisualizestheoverallsurvivalofpatientswithtriplenegativebreastcancerbasedontheimmunegenome