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Adaptability and stability analyses of plants using random regression models

The evaluation of cultivars using multi-environment trials (MET) is an important step in plant breeding programs. One of the objectives of these evaluations is to understand the genotype by environment interaction (GEI). A method of determining the effect of GEI on the performance of cultivars is ba...

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Autores principales: de Souza, Michel Henriques, Pereira Júnior, José Domingos, Steckling, Skarlet De Marco, Mencalha, Jussara, Dias, Fabíola dos Santos, Rocha, João Romero do Amaral Santos de Carvalho, Carneiro, Pedro Crescêncio Souza, Carneiro, José Eustáquio de Souza
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7710123/
https://www.ncbi.nlm.nih.gov/pubmed/33264283
http://dx.doi.org/10.1371/journal.pone.0233200
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author de Souza, Michel Henriques
Pereira Júnior, José Domingos
Steckling, Skarlet De Marco
Mencalha, Jussara
Dias, Fabíola dos Santos
Rocha, João Romero do Amaral Santos de Carvalho
Carneiro, Pedro Crescêncio Souza
Carneiro, José Eustáquio de Souza
author_facet de Souza, Michel Henriques
Pereira Júnior, José Domingos
Steckling, Skarlet De Marco
Mencalha, Jussara
Dias, Fabíola dos Santos
Rocha, João Romero do Amaral Santos de Carvalho
Carneiro, Pedro Crescêncio Souza
Carneiro, José Eustáquio de Souza
author_sort de Souza, Michel Henriques
collection PubMed
description The evaluation of cultivars using multi-environment trials (MET) is an important step in plant breeding programs. One of the objectives of these evaluations is to understand the genotype by environment interaction (GEI). A method of determining the effect of GEI on the performance of cultivars is based on studies of adaptability and stability. Initial studies were based on linear regression; however, these methodologies have limitations, mainly in trials with genetic or statistical unbalanced, heterogeneity of residual variances, and genetic covariance. An alternative would be the use of random regression models (RRM), in which the behavior of the genotypes is characterized as a reaction norm using longitudinal data or repeated measurements and information regarding a covariance function. The objective of this work was the application of RRM in the study of the behavior of common bean cultivars using a MET, based on Legendre polynomials and genotype-ideotype distances. We used a set of 13 trials, which were classified as unfavorable or favorable environments. The results revealed that RRM enables the prediction of the genotypic values of cultivars in environments where they were not evaluated with high accuracy values, thereby circumventing the unbalanced of the experiments. From these values, it was possible to measure the genotypic adaptability according to ideotypes, according to their reaction norms. In addition, the stability of the cultivars can be interpreted as variation in the behavior of the ideotype. The use of ideotypes based on real data allowed a better comparison of the performance of cultivars across environments. The use of RRM in plant breeding is a good alternative to understand the behavior of cultivars in a MET, especially when we want to quantify the adaptability and stability of genotypes.
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spelling pubmed-77101232020-12-03 Adaptability and stability analyses of plants using random regression models de Souza, Michel Henriques Pereira Júnior, José Domingos Steckling, Skarlet De Marco Mencalha, Jussara Dias, Fabíola dos Santos Rocha, João Romero do Amaral Santos de Carvalho Carneiro, Pedro Crescêncio Souza Carneiro, José Eustáquio de Souza PLoS One Research Article The evaluation of cultivars using multi-environment trials (MET) is an important step in plant breeding programs. One of the objectives of these evaluations is to understand the genotype by environment interaction (GEI). A method of determining the effect of GEI on the performance of cultivars is based on studies of adaptability and stability. Initial studies were based on linear regression; however, these methodologies have limitations, mainly in trials with genetic or statistical unbalanced, heterogeneity of residual variances, and genetic covariance. An alternative would be the use of random regression models (RRM), in which the behavior of the genotypes is characterized as a reaction norm using longitudinal data or repeated measurements and information regarding a covariance function. The objective of this work was the application of RRM in the study of the behavior of common bean cultivars using a MET, based on Legendre polynomials and genotype-ideotype distances. We used a set of 13 trials, which were classified as unfavorable or favorable environments. The results revealed that RRM enables the prediction of the genotypic values of cultivars in environments where they were not evaluated with high accuracy values, thereby circumventing the unbalanced of the experiments. From these values, it was possible to measure the genotypic adaptability according to ideotypes, according to their reaction norms. In addition, the stability of the cultivars can be interpreted as variation in the behavior of the ideotype. The use of ideotypes based on real data allowed a better comparison of the performance of cultivars across environments. The use of RRM in plant breeding is a good alternative to understand the behavior of cultivars in a MET, especially when we want to quantify the adaptability and stability of genotypes. Public Library of Science 2020-12-02 /pmc/articles/PMC7710123/ /pubmed/33264283 http://dx.doi.org/10.1371/journal.pone.0233200 Text en © 2020 de Souza et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
de Souza, Michel Henriques
Pereira Júnior, José Domingos
Steckling, Skarlet De Marco
Mencalha, Jussara
Dias, Fabíola dos Santos
Rocha, João Romero do Amaral Santos de Carvalho
Carneiro, Pedro Crescêncio Souza
Carneiro, José Eustáquio de Souza
Adaptability and stability analyses of plants using random regression models
title Adaptability and stability analyses of plants using random regression models
title_full Adaptability and stability analyses of plants using random regression models
title_fullStr Adaptability and stability analyses of plants using random regression models
title_full_unstemmed Adaptability and stability analyses of plants using random regression models
title_short Adaptability and stability analyses of plants using random regression models
title_sort adaptability and stability analyses of plants using random regression models
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7710123/
https://www.ncbi.nlm.nih.gov/pubmed/33264283
http://dx.doi.org/10.1371/journal.pone.0233200
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