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The mitochondrial genome from the stonefly: Claassenia sp. (Plecoptera: Perlidae)

Claasseniini is the apparent sister group to all the other groups of Perlidae, and the small tribe Claasseniini has only one genus includes 12 species in the world. Only five mitochondrial genomes in the Perlinae have previously been reported. In this study, we sequenced the mitochondrial genome of...

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Autores principales: Chen, Mengdan, Cao, Jinjun, Li, Weihai, Wang, Ying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7710317/
https://www.ncbi.nlm.nih.gov/pubmed/33366193
http://dx.doi.org/10.1080/23802359.2019.1681918
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author Chen, Mengdan
Cao, Jinjun
Li, Weihai
Wang, Ying
author_facet Chen, Mengdan
Cao, Jinjun
Li, Weihai
Wang, Ying
author_sort Chen, Mengdan
collection PubMed
description Claasseniini is the apparent sister group to all the other groups of Perlidae, and the small tribe Claasseniini has only one genus includes 12 species in the world. Only five mitochondrial genomes in the Perlinae have previously been reported. In this study, we sequenced the mitochondrial genome of Claassenia sp. Wu in genus Claassenia for the first time. The total length of the mitochondrial genome is 15,774 bp, and the DNA base composition is 34.0% A, 27.4% T, 25.6% C and 13.0% G. The whole genome contains 37 genes and one control region, which is similar to other published stoneflies. All PCG started with ATN except CCG for COI gene, TTG for ND1 gene, GTG for ND4 and ND5 genes. The termination codon of 11 PCGs used the normal complete codon TAA or TAG, and the COII and ND5 genes were terminated by a single T. All tRNAs except tRNA(Ser(AGN)) fold into a classic clover structure. The phylogenetic tree by Maximum likelihood (ML) and Bayesian (BI) methods supported that Claassenia sp. was the basal taxa of the Perlidae clade. This study provides new data for further mitochondrial genome study on the Perlidae.
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spelling pubmed-77103172020-12-22 The mitochondrial genome from the stonefly: Claassenia sp. (Plecoptera: Perlidae) Chen, Mengdan Cao, Jinjun Li, Weihai Wang, Ying Mitochondrial DNA B Resour Mitogenome Announcement Claasseniini is the apparent sister group to all the other groups of Perlidae, and the small tribe Claasseniini has only one genus includes 12 species in the world. Only five mitochondrial genomes in the Perlinae have previously been reported. In this study, we sequenced the mitochondrial genome of Claassenia sp. Wu in genus Claassenia for the first time. The total length of the mitochondrial genome is 15,774 bp, and the DNA base composition is 34.0% A, 27.4% T, 25.6% C and 13.0% G. The whole genome contains 37 genes and one control region, which is similar to other published stoneflies. All PCG started with ATN except CCG for COI gene, TTG for ND1 gene, GTG for ND4 and ND5 genes. The termination codon of 11 PCGs used the normal complete codon TAA or TAG, and the COII and ND5 genes were terminated by a single T. All tRNAs except tRNA(Ser(AGN)) fold into a classic clover structure. The phylogenetic tree by Maximum likelihood (ML) and Bayesian (BI) methods supported that Claassenia sp. was the basal taxa of the Perlidae clade. This study provides new data for further mitochondrial genome study on the Perlidae. Taylor & Francis 2019-10-26 /pmc/articles/PMC7710317/ /pubmed/33366193 http://dx.doi.org/10.1080/23802359.2019.1681918 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Chen, Mengdan
Cao, Jinjun
Li, Weihai
Wang, Ying
The mitochondrial genome from the stonefly: Claassenia sp. (Plecoptera: Perlidae)
title The mitochondrial genome from the stonefly: Claassenia sp. (Plecoptera: Perlidae)
title_full The mitochondrial genome from the stonefly: Claassenia sp. (Plecoptera: Perlidae)
title_fullStr The mitochondrial genome from the stonefly: Claassenia sp. (Plecoptera: Perlidae)
title_full_unstemmed The mitochondrial genome from the stonefly: Claassenia sp. (Plecoptera: Perlidae)
title_short The mitochondrial genome from the stonefly: Claassenia sp. (Plecoptera: Perlidae)
title_sort mitochondrial genome from the stonefly: claassenia sp. (plecoptera: perlidae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7710317/
https://www.ncbi.nlm.nih.gov/pubmed/33366193
http://dx.doi.org/10.1080/23802359.2019.1681918
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