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Topographic brain tumor anatomy drives seizure risk and enables machine learning based prediction
OBJECTIVE: The aim of this study was to identify relevant risk factors for epileptic seizures upon initial diagnosis of a brain tumor and to develop and validate a machine learning based prediction to allow for a tailored risk-based antiepileptic therapy. METHODS: Clinical, electrophysiological and...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7711280/ https://www.ncbi.nlm.nih.gov/pubmed/33395995 http://dx.doi.org/10.1016/j.nicl.2020.102506 |
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author | Akeret, Kevin Stumpo, Vittorio Staartjes, Victor E. Vasella, Flavio Velz, Julia Marinoni, Federica Dufour, Jean-Philippe Imbach, Lukas L. Regli, Luca Serra, Carlo Krayenbühl, Niklaus |
author_facet | Akeret, Kevin Stumpo, Vittorio Staartjes, Victor E. Vasella, Flavio Velz, Julia Marinoni, Federica Dufour, Jean-Philippe Imbach, Lukas L. Regli, Luca Serra, Carlo Krayenbühl, Niklaus |
author_sort | Akeret, Kevin |
collection | PubMed |
description | OBJECTIVE: The aim of this study was to identify relevant risk factors for epileptic seizures upon initial diagnosis of a brain tumor and to develop and validate a machine learning based prediction to allow for a tailored risk-based antiepileptic therapy. METHODS: Clinical, electrophysiological and high-resolution imaging data was obtained from a consecutive cohort of 1051 patients with newly diagnosed brain tumors. Factor-associated seizure risk difference allowed to determine the relevance of specific topographic, demographic and histopathologic variables available at the time of diagnosis for seizure risk. The data was divided in a 70/30 ratio into a training and test set. Different machine learning based predictive models were evaluated before a generalized additive model (GAM) was selected considering its traceability while maintaining high performance. Based on a clinical stratification of the risk factors, three different GAM were trained and internally validated. RESULTS: A total of 923 patients had full data and were included. Specific topographic anatomical patterns that drive seizure risk could be identified. The involvement of allopallial, mesopallial or primary motor/somatosensory neopallial structures by brain tumors results in a significant and clinically relevant increase in seizure risk. While topographic input was most relevant for the GAM, the best prediction was achieved by a combination of topographic, demographic and histopathologic information (Validation: AUC: 0.79, Accuracy: 0.72, Sensitivity: 0.81, Specificity: 0.66). CONCLUSIONS: This study identifies specific phylogenetic anatomical patterns as epileptic drivers. A GAM allowed the prediction of seizure risk using topographic, demographic and histopathologic data achieving fair performance while maintaining transparency. |
format | Online Article Text |
id | pubmed-7711280 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-77112802020-12-09 Topographic brain tumor anatomy drives seizure risk and enables machine learning based prediction Akeret, Kevin Stumpo, Vittorio Staartjes, Victor E. Vasella, Flavio Velz, Julia Marinoni, Federica Dufour, Jean-Philippe Imbach, Lukas L. Regli, Luca Serra, Carlo Krayenbühl, Niklaus Neuroimage Clin Regular Article OBJECTIVE: The aim of this study was to identify relevant risk factors for epileptic seizures upon initial diagnosis of a brain tumor and to develop and validate a machine learning based prediction to allow for a tailored risk-based antiepileptic therapy. METHODS: Clinical, electrophysiological and high-resolution imaging data was obtained from a consecutive cohort of 1051 patients with newly diagnosed brain tumors. Factor-associated seizure risk difference allowed to determine the relevance of specific topographic, demographic and histopathologic variables available at the time of diagnosis for seizure risk. The data was divided in a 70/30 ratio into a training and test set. Different machine learning based predictive models were evaluated before a generalized additive model (GAM) was selected considering its traceability while maintaining high performance. Based on a clinical stratification of the risk factors, three different GAM were trained and internally validated. RESULTS: A total of 923 patients had full data and were included. Specific topographic anatomical patterns that drive seizure risk could be identified. The involvement of allopallial, mesopallial or primary motor/somatosensory neopallial structures by brain tumors results in a significant and clinically relevant increase in seizure risk. While topographic input was most relevant for the GAM, the best prediction was achieved by a combination of topographic, demographic and histopathologic information (Validation: AUC: 0.79, Accuracy: 0.72, Sensitivity: 0.81, Specificity: 0.66). CONCLUSIONS: This study identifies specific phylogenetic anatomical patterns as epileptic drivers. A GAM allowed the prediction of seizure risk using topographic, demographic and histopathologic data achieving fair performance while maintaining transparency. Elsevier 2020-11-19 /pmc/articles/PMC7711280/ /pubmed/33395995 http://dx.doi.org/10.1016/j.nicl.2020.102506 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Regular Article Akeret, Kevin Stumpo, Vittorio Staartjes, Victor E. Vasella, Flavio Velz, Julia Marinoni, Federica Dufour, Jean-Philippe Imbach, Lukas L. Regli, Luca Serra, Carlo Krayenbühl, Niklaus Topographic brain tumor anatomy drives seizure risk and enables machine learning based prediction |
title | Topographic brain tumor anatomy drives seizure risk and enables machine learning based prediction |
title_full | Topographic brain tumor anatomy drives seizure risk and enables machine learning based prediction |
title_fullStr | Topographic brain tumor anatomy drives seizure risk and enables machine learning based prediction |
title_full_unstemmed | Topographic brain tumor anatomy drives seizure risk and enables machine learning based prediction |
title_short | Topographic brain tumor anatomy drives seizure risk and enables machine learning based prediction |
title_sort | topographic brain tumor anatomy drives seizure risk and enables machine learning based prediction |
topic | Regular Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7711280/ https://www.ncbi.nlm.nih.gov/pubmed/33395995 http://dx.doi.org/10.1016/j.nicl.2020.102506 |
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