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Variant Interpretation in Current Pharmacogenetic Testing

In the current marketplace, there are now more than a dozen commercial companies providing pharmacogenetic tests. Each company varies in the panel of genes they test and the variants they are able to screen for. The reports generated by these companies provide phenotypic interpretations of pharmacog...

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Autores principales: Luvsantseren, Sally, Whirl-Carrillo, Michelle, Sangkuhl, Katrin, Shin, Nancy, Wen, Alice, Empey, Philip, Alam, Benish, David, Sean, Dunnenberger, Henry M., Orlando, Lori, Altman, Russ, Palaniappan, Latha
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7712137/
https://www.ncbi.nlm.nih.gov/pubmed/33142667
http://dx.doi.org/10.3390/jpm10040204
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author Luvsantseren, Sally
Whirl-Carrillo, Michelle
Sangkuhl, Katrin
Shin, Nancy
Wen, Alice
Empey, Philip
Alam, Benish
David, Sean
Dunnenberger, Henry M.
Orlando, Lori
Altman, Russ
Palaniappan, Latha
author_facet Luvsantseren, Sally
Whirl-Carrillo, Michelle
Sangkuhl, Katrin
Shin, Nancy
Wen, Alice
Empey, Philip
Alam, Benish
David, Sean
Dunnenberger, Henry M.
Orlando, Lori
Altman, Russ
Palaniappan, Latha
author_sort Luvsantseren, Sally
collection PubMed
description In the current marketplace, there are now more than a dozen commercial companies providing pharmacogenetic tests. Each company varies in the panel of genes they test and the variants they are able to screen for. The reports generated by these companies provide phenotypic interpretations of pharmacogenes and clinically actionable gene–drug interactions based on internally curated data and proprietary algorithms. The freedom to choose the types of evidence to include versus exclude in interpreting genomics has created reporting discrepancies in the industry. The case report presented here reveals the discordant phenotype analysis provided by two pharmacogenetic testing companies. The uncertainty and unnecessary distress experienced by the patient highlights the need for consensus in phenotype reporting within the industry.
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spelling pubmed-77121372020-12-04 Variant Interpretation in Current Pharmacogenetic Testing Luvsantseren, Sally Whirl-Carrillo, Michelle Sangkuhl, Katrin Shin, Nancy Wen, Alice Empey, Philip Alam, Benish David, Sean Dunnenberger, Henry M. Orlando, Lori Altman, Russ Palaniappan, Latha J Pers Med Case Report In the current marketplace, there are now more than a dozen commercial companies providing pharmacogenetic tests. Each company varies in the panel of genes they test and the variants they are able to screen for. The reports generated by these companies provide phenotypic interpretations of pharmacogenes and clinically actionable gene–drug interactions based on internally curated data and proprietary algorithms. The freedom to choose the types of evidence to include versus exclude in interpreting genomics has created reporting discrepancies in the industry. The case report presented here reveals the discordant phenotype analysis provided by two pharmacogenetic testing companies. The uncertainty and unnecessary distress experienced by the patient highlights the need for consensus in phenotype reporting within the industry. MDPI 2020-10-31 /pmc/articles/PMC7712137/ /pubmed/33142667 http://dx.doi.org/10.3390/jpm10040204 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Case Report
Luvsantseren, Sally
Whirl-Carrillo, Michelle
Sangkuhl, Katrin
Shin, Nancy
Wen, Alice
Empey, Philip
Alam, Benish
David, Sean
Dunnenberger, Henry M.
Orlando, Lori
Altman, Russ
Palaniappan, Latha
Variant Interpretation in Current Pharmacogenetic Testing
title Variant Interpretation in Current Pharmacogenetic Testing
title_full Variant Interpretation in Current Pharmacogenetic Testing
title_fullStr Variant Interpretation in Current Pharmacogenetic Testing
title_full_unstemmed Variant Interpretation in Current Pharmacogenetic Testing
title_short Variant Interpretation in Current Pharmacogenetic Testing
title_sort variant interpretation in current pharmacogenetic testing
topic Case Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7712137/
https://www.ncbi.nlm.nih.gov/pubmed/33142667
http://dx.doi.org/10.3390/jpm10040204
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