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Classification of invasive bloodstream infections and Plasmodium falciparum malaria using autoantibodies as biomarkers
A better understanding of disease-specific biomarker profiles during acute infections could guide the development of innovative diagnostic methods to differentiate between malaria and alternative causes of fever. We investigated autoantibody (AAb) profiles in febrile children (≤ 5 years) admitted to...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7712777/ https://www.ncbi.nlm.nih.gov/pubmed/33273605 http://dx.doi.org/10.1038/s41598-020-78155-y |
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author | Krumkamp, Ralf Struck, Nicole Sunaina Lorenz, Eva Zimmermann, Marlow Boahen, Kennedy Gyau Sarpong, Nimako Owusu-Dabo, Ellis Pak, Gi Deok Jeon, Hyon Jin Marks, Florian Jacobs, Thomas May, Jürgen Eibach, Daniel |
author_facet | Krumkamp, Ralf Struck, Nicole Sunaina Lorenz, Eva Zimmermann, Marlow Boahen, Kennedy Gyau Sarpong, Nimako Owusu-Dabo, Ellis Pak, Gi Deok Jeon, Hyon Jin Marks, Florian Jacobs, Thomas May, Jürgen Eibach, Daniel |
author_sort | Krumkamp, Ralf |
collection | PubMed |
description | A better understanding of disease-specific biomarker profiles during acute infections could guide the development of innovative diagnostic methods to differentiate between malaria and alternative causes of fever. We investigated autoantibody (AAb) profiles in febrile children (≤ 5 years) admitted to a hospital in rural Ghana. Serum samples from 30 children with a bacterial bloodstream infection and 35 children with Plasmodium falciparum malaria were analyzed using protein microarrays (Protoplex Immune Response Assay, ThermoFisher). A variable selection algorithm was applied to identify the smallest set of AAbs showing the best performance to classify malaria and bacteremia patients. The selection procedure identified 8 AAbs of which IFNGR2 and FBXW5 were selected in repeated model run. The classification error was 22%, which was mainly due to non-Typhi Salmonella (NTS) diagnoses being misclassified as malaria. Likewise, a cluster analysis grouped patients with NTS and malaria together, but separated malaria from non-NTS infections. Both current and recent malaria are a risk factor for NTS, therefore, a better understanding about the function of AAb in disease-specific immune responses is required in order to support their application for diagnostic purposes. |
format | Online Article Text |
id | pubmed-7712777 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-77127772020-12-03 Classification of invasive bloodstream infections and Plasmodium falciparum malaria using autoantibodies as biomarkers Krumkamp, Ralf Struck, Nicole Sunaina Lorenz, Eva Zimmermann, Marlow Boahen, Kennedy Gyau Sarpong, Nimako Owusu-Dabo, Ellis Pak, Gi Deok Jeon, Hyon Jin Marks, Florian Jacobs, Thomas May, Jürgen Eibach, Daniel Sci Rep Article A better understanding of disease-specific biomarker profiles during acute infections could guide the development of innovative diagnostic methods to differentiate between malaria and alternative causes of fever. We investigated autoantibody (AAb) profiles in febrile children (≤ 5 years) admitted to a hospital in rural Ghana. Serum samples from 30 children with a bacterial bloodstream infection and 35 children with Plasmodium falciparum malaria were analyzed using protein microarrays (Protoplex Immune Response Assay, ThermoFisher). A variable selection algorithm was applied to identify the smallest set of AAbs showing the best performance to classify malaria and bacteremia patients. The selection procedure identified 8 AAbs of which IFNGR2 and FBXW5 were selected in repeated model run. The classification error was 22%, which was mainly due to non-Typhi Salmonella (NTS) diagnoses being misclassified as malaria. Likewise, a cluster analysis grouped patients with NTS and malaria together, but separated malaria from non-NTS infections. Both current and recent malaria are a risk factor for NTS, therefore, a better understanding about the function of AAb in disease-specific immune responses is required in order to support their application for diagnostic purposes. Nature Publishing Group UK 2020-12-03 /pmc/articles/PMC7712777/ /pubmed/33273605 http://dx.doi.org/10.1038/s41598-020-78155-y Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Krumkamp, Ralf Struck, Nicole Sunaina Lorenz, Eva Zimmermann, Marlow Boahen, Kennedy Gyau Sarpong, Nimako Owusu-Dabo, Ellis Pak, Gi Deok Jeon, Hyon Jin Marks, Florian Jacobs, Thomas May, Jürgen Eibach, Daniel Classification of invasive bloodstream infections and Plasmodium falciparum malaria using autoantibodies as biomarkers |
title | Classification of invasive bloodstream infections and Plasmodium falciparum malaria using autoantibodies as biomarkers |
title_full | Classification of invasive bloodstream infections and Plasmodium falciparum malaria using autoantibodies as biomarkers |
title_fullStr | Classification of invasive bloodstream infections and Plasmodium falciparum malaria using autoantibodies as biomarkers |
title_full_unstemmed | Classification of invasive bloodstream infections and Plasmodium falciparum malaria using autoantibodies as biomarkers |
title_short | Classification of invasive bloodstream infections and Plasmodium falciparum malaria using autoantibodies as biomarkers |
title_sort | classification of invasive bloodstream infections and plasmodium falciparum malaria using autoantibodies as biomarkers |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7712777/ https://www.ncbi.nlm.nih.gov/pubmed/33273605 http://dx.doi.org/10.1038/s41598-020-78155-y |
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