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Topological image modification for object detection and topological image processing of skin lesions
We propose a new method based on Topological Data Analysis (TDA) consisting of Topological Image Modification (TIM) and Topological Image Processing (TIP) for object detection. Through this newly introduced method, we artificially destruct irrelevant objects, and construct new objects with known top...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7713118/ https://www.ncbi.nlm.nih.gov/pubmed/33273628 http://dx.doi.org/10.1038/s41598-020-77933-y |
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author | Vandaele, Robin Nervo, Guillaume Adrien Gevaert, Olivier |
author_facet | Vandaele, Robin Nervo, Guillaume Adrien Gevaert, Olivier |
author_sort | Vandaele, Robin |
collection | PubMed |
description | We propose a new method based on Topological Data Analysis (TDA) consisting of Topological Image Modification (TIM) and Topological Image Processing (TIP) for object detection. Through this newly introduced method, we artificially destruct irrelevant objects, and construct new objects with known topological properties in irrelevant regions of an image. This ensures that we are able to identify the important objects in relevant regions of the image. We do this by means of persistent homology, which allows us to simultaneously select appropriate thresholds, as well as the objects corresponding to these thresholds, and separate them from the noisy background of an image. This leads to a new image, processed in a completely unsupervised manner, from which one may more efficiently extract important objects. We demonstrate the usefulness of this proposed method for topological image processing through a case-study of unsupervised segmentation of the ISIC 2018 skin lesion images. Code for this project is available on https://bitbucket.org/ghentdatascience/topimgprocess. |
format | Online Article Text |
id | pubmed-7713118 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-77131182020-12-03 Topological image modification for object detection and topological image processing of skin lesions Vandaele, Robin Nervo, Guillaume Adrien Gevaert, Olivier Sci Rep Article We propose a new method based on Topological Data Analysis (TDA) consisting of Topological Image Modification (TIM) and Topological Image Processing (TIP) for object detection. Through this newly introduced method, we artificially destruct irrelevant objects, and construct new objects with known topological properties in irrelevant regions of an image. This ensures that we are able to identify the important objects in relevant regions of the image. We do this by means of persistent homology, which allows us to simultaneously select appropriate thresholds, as well as the objects corresponding to these thresholds, and separate them from the noisy background of an image. This leads to a new image, processed in a completely unsupervised manner, from which one may more efficiently extract important objects. We demonstrate the usefulness of this proposed method for topological image processing through a case-study of unsupervised segmentation of the ISIC 2018 skin lesion images. Code for this project is available on https://bitbucket.org/ghentdatascience/topimgprocess. Nature Publishing Group UK 2020-12-03 /pmc/articles/PMC7713118/ /pubmed/33273628 http://dx.doi.org/10.1038/s41598-020-77933-y Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Vandaele, Robin Nervo, Guillaume Adrien Gevaert, Olivier Topological image modification for object detection and topological image processing of skin lesions |
title | Topological image modification for object detection and topological image processing of skin lesions |
title_full | Topological image modification for object detection and topological image processing of skin lesions |
title_fullStr | Topological image modification for object detection and topological image processing of skin lesions |
title_full_unstemmed | Topological image modification for object detection and topological image processing of skin lesions |
title_short | Topological image modification for object detection and topological image processing of skin lesions |
title_sort | topological image modification for object detection and topological image processing of skin lesions |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7713118/ https://www.ncbi.nlm.nih.gov/pubmed/33273628 http://dx.doi.org/10.1038/s41598-020-77933-y |
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