Cargando…

Topological image modification for object detection and topological image processing of skin lesions

We propose a new method based on Topological Data Analysis (TDA) consisting of Topological Image Modification (TIM) and Topological Image Processing (TIP) for object detection. Through this newly introduced method, we artificially destruct irrelevant objects, and construct new objects with known top...

Descripción completa

Detalles Bibliográficos
Autores principales: Vandaele, Robin, Nervo, Guillaume Adrien, Gevaert, Olivier
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7713118/
https://www.ncbi.nlm.nih.gov/pubmed/33273628
http://dx.doi.org/10.1038/s41598-020-77933-y
_version_ 1783618516178436096
author Vandaele, Robin
Nervo, Guillaume Adrien
Gevaert, Olivier
author_facet Vandaele, Robin
Nervo, Guillaume Adrien
Gevaert, Olivier
author_sort Vandaele, Robin
collection PubMed
description We propose a new method based on Topological Data Analysis (TDA) consisting of Topological Image Modification (TIM) and Topological Image Processing (TIP) for object detection. Through this newly introduced method, we artificially destruct irrelevant objects, and construct new objects with known topological properties in irrelevant regions of an image. This ensures that we are able to identify the important objects in relevant regions of the image. We do this by means of persistent homology, which allows us to simultaneously select appropriate thresholds, as well as the objects corresponding to these thresholds, and separate them from the noisy background of an image. This leads to a new image, processed in a completely unsupervised manner, from which one may more efficiently extract important objects. We demonstrate the usefulness of this proposed method for topological image processing through a case-study of unsupervised segmentation of the ISIC 2018 skin lesion images. Code for this project is available on https://bitbucket.org/ghentdatascience/topimgprocess.
format Online
Article
Text
id pubmed-7713118
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-77131182020-12-03 Topological image modification for object detection and topological image processing of skin lesions Vandaele, Robin Nervo, Guillaume Adrien Gevaert, Olivier Sci Rep Article We propose a new method based on Topological Data Analysis (TDA) consisting of Topological Image Modification (TIM) and Topological Image Processing (TIP) for object detection. Through this newly introduced method, we artificially destruct irrelevant objects, and construct new objects with known topological properties in irrelevant regions of an image. This ensures that we are able to identify the important objects in relevant regions of the image. We do this by means of persistent homology, which allows us to simultaneously select appropriate thresholds, as well as the objects corresponding to these thresholds, and separate them from the noisy background of an image. This leads to a new image, processed in a completely unsupervised manner, from which one may more efficiently extract important objects. We demonstrate the usefulness of this proposed method for topological image processing through a case-study of unsupervised segmentation of the ISIC 2018 skin lesion images. Code for this project is available on https://bitbucket.org/ghentdatascience/topimgprocess. Nature Publishing Group UK 2020-12-03 /pmc/articles/PMC7713118/ /pubmed/33273628 http://dx.doi.org/10.1038/s41598-020-77933-y Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Vandaele, Robin
Nervo, Guillaume Adrien
Gevaert, Olivier
Topological image modification for object detection and topological image processing of skin lesions
title Topological image modification for object detection and topological image processing of skin lesions
title_full Topological image modification for object detection and topological image processing of skin lesions
title_fullStr Topological image modification for object detection and topological image processing of skin lesions
title_full_unstemmed Topological image modification for object detection and topological image processing of skin lesions
title_short Topological image modification for object detection and topological image processing of skin lesions
title_sort topological image modification for object detection and topological image processing of skin lesions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7713118/
https://www.ncbi.nlm.nih.gov/pubmed/33273628
http://dx.doi.org/10.1038/s41598-020-77933-y
work_keys_str_mv AT vandaelerobin topologicalimagemodificationforobjectdetectionandtopologicalimageprocessingofskinlesions
AT nervoguillaumeadrien topologicalimagemodificationforobjectdetectionandtopologicalimageprocessingofskinlesions
AT gevaertolivier topologicalimagemodificationforobjectdetectionandtopologicalimageprocessingofskinlesions