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Innovative microfossil (radiolarian) analysis using a system for automated image collection and AI-based classification of species

Microfossils are a powerful tool in earth sciences, and they have been widely used for the determination of geological age and in paleoenvironmental studies. However, the identification of fossil species requires considerable time and labor by experts with extensive knowledge and experience. In this...

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Autores principales: Itaki, Takuya, Taira, Yosuke, Kuwamori, Naoki, Saito, Hitoshi, Ikehara, Minoru, Hoshino, Tatsuhiko
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7713231/
https://www.ncbi.nlm.nih.gov/pubmed/33273507
http://dx.doi.org/10.1038/s41598-020-77812-6
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author Itaki, Takuya
Taira, Yosuke
Kuwamori, Naoki
Saito, Hitoshi
Ikehara, Minoru
Hoshino, Tatsuhiko
author_facet Itaki, Takuya
Taira, Yosuke
Kuwamori, Naoki
Saito, Hitoshi
Ikehara, Minoru
Hoshino, Tatsuhiko
author_sort Itaki, Takuya
collection PubMed
description Microfossils are a powerful tool in earth sciences, and they have been widely used for the determination of geological age and in paleoenvironmental studies. However, the identification of fossil species requires considerable time and labor by experts with extensive knowledge and experience. In this study, we successfully automated the acquisition of microfossil data using an artificial intelligence system that employs a computer-controlled microscope and deep learning methods. The system was used to calculate changes in the relative abundance (%) of Cycladophora davisiana, a siliceous microfossil species (Radiolaria) that is widely used as a stratigraphic tool in studies on Pleistocene sediments in the Southern Ocean. The estimates obtained using this system were consistent with the results obtained by a human expert (< ± 3.2%). In terms of efficiency, the developed system was capable of performing the classification tasks approximately three times faster than a human expert performing the same task.
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spelling pubmed-77132312020-12-03 Innovative microfossil (radiolarian) analysis using a system for automated image collection and AI-based classification of species Itaki, Takuya Taira, Yosuke Kuwamori, Naoki Saito, Hitoshi Ikehara, Minoru Hoshino, Tatsuhiko Sci Rep Article Microfossils are a powerful tool in earth sciences, and they have been widely used for the determination of geological age and in paleoenvironmental studies. However, the identification of fossil species requires considerable time and labor by experts with extensive knowledge and experience. In this study, we successfully automated the acquisition of microfossil data using an artificial intelligence system that employs a computer-controlled microscope and deep learning methods. The system was used to calculate changes in the relative abundance (%) of Cycladophora davisiana, a siliceous microfossil species (Radiolaria) that is widely used as a stratigraphic tool in studies on Pleistocene sediments in the Southern Ocean. The estimates obtained using this system were consistent with the results obtained by a human expert (< ± 3.2%). In terms of efficiency, the developed system was capable of performing the classification tasks approximately three times faster than a human expert performing the same task. Nature Publishing Group UK 2020-12-03 /pmc/articles/PMC7713231/ /pubmed/33273507 http://dx.doi.org/10.1038/s41598-020-77812-6 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Itaki, Takuya
Taira, Yosuke
Kuwamori, Naoki
Saito, Hitoshi
Ikehara, Minoru
Hoshino, Tatsuhiko
Innovative microfossil (radiolarian) analysis using a system for automated image collection and AI-based classification of species
title Innovative microfossil (radiolarian) analysis using a system for automated image collection and AI-based classification of species
title_full Innovative microfossil (radiolarian) analysis using a system for automated image collection and AI-based classification of species
title_fullStr Innovative microfossil (radiolarian) analysis using a system for automated image collection and AI-based classification of species
title_full_unstemmed Innovative microfossil (radiolarian) analysis using a system for automated image collection and AI-based classification of species
title_short Innovative microfossil (radiolarian) analysis using a system for automated image collection and AI-based classification of species
title_sort innovative microfossil (radiolarian) analysis using a system for automated image collection and ai-based classification of species
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7713231/
https://www.ncbi.nlm.nih.gov/pubmed/33273507
http://dx.doi.org/10.1038/s41598-020-77812-6
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