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The change of conditions does not affect Ros87 downhill folding mechanism

Downhill folding has been defined as a unique thermodynamic process involving a conformations ensemble that progressively loses structure with the decrease of protein stability. Downhill folders are estimated to be rather rare in nature as they miss an energetically substantial folding barrier that...

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Autores principales: Grazioso, Rinaldo, García-Viñuales, Sara, D’Abrosca, Gianluca, Baglivo, Ilaria, Pedone, Paolo Vincenzo, Milardi, Danilo, Fattorusso, Roberto, Isernia, Carla, Russo, Luigi, Malgieri, Gaetano
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
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Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7713307/
https://www.ncbi.nlm.nih.gov/pubmed/33273582
http://dx.doi.org/10.1038/s41598-020-78008-8
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author Grazioso, Rinaldo
García-Viñuales, Sara
D’Abrosca, Gianluca
Baglivo, Ilaria
Pedone, Paolo Vincenzo
Milardi, Danilo
Fattorusso, Roberto
Isernia, Carla
Russo, Luigi
Malgieri, Gaetano
author_facet Grazioso, Rinaldo
García-Viñuales, Sara
D’Abrosca, Gianluca
Baglivo, Ilaria
Pedone, Paolo Vincenzo
Milardi, Danilo
Fattorusso, Roberto
Isernia, Carla
Russo, Luigi
Malgieri, Gaetano
author_sort Grazioso, Rinaldo
collection PubMed
description Downhill folding has been defined as a unique thermodynamic process involving a conformations ensemble that progressively loses structure with the decrease of protein stability. Downhill folders are estimated to be rather rare in nature as they miss an energetically substantial folding barrier that can protect against aggregation and proteolysis. We have previously demonstrated that the prokaryotic zinc finger protein Ros87 shows a bipartite folding/unfolding process in which a metal binding intermediate converts to the native structure through a delicate barrier-less downhill transition. Significant variation in folding scenarios can be detected within protein families with high sequence identity and very similar folds and for the same sequence by varying conditions. For this reason, we here show, by means of DSC, CD and NMR, that also in different pH and ionic strength conditions Ros87 retains its partly downhill folding scenario demonstrating that, at least in metallo-proteins, the downhill mechanism can be found under a much wider range of conditions and coupled to other different transitions. We also show that mutations of Ros87 zinc coordination sphere produces a different folding scenario demonstrating that the organization of the metal ion core is determinant in the folding process of this family of proteins.
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spelling pubmed-77133072020-12-03 The change of conditions does not affect Ros87 downhill folding mechanism Grazioso, Rinaldo García-Viñuales, Sara D’Abrosca, Gianluca Baglivo, Ilaria Pedone, Paolo Vincenzo Milardi, Danilo Fattorusso, Roberto Isernia, Carla Russo, Luigi Malgieri, Gaetano Sci Rep Article Downhill folding has been defined as a unique thermodynamic process involving a conformations ensemble that progressively loses structure with the decrease of protein stability. Downhill folders are estimated to be rather rare in nature as they miss an energetically substantial folding barrier that can protect against aggregation and proteolysis. We have previously demonstrated that the prokaryotic zinc finger protein Ros87 shows a bipartite folding/unfolding process in which a metal binding intermediate converts to the native structure through a delicate barrier-less downhill transition. Significant variation in folding scenarios can be detected within protein families with high sequence identity and very similar folds and for the same sequence by varying conditions. For this reason, we here show, by means of DSC, CD and NMR, that also in different pH and ionic strength conditions Ros87 retains its partly downhill folding scenario demonstrating that, at least in metallo-proteins, the downhill mechanism can be found under a much wider range of conditions and coupled to other different transitions. We also show that mutations of Ros87 zinc coordination sphere produces a different folding scenario demonstrating that the organization of the metal ion core is determinant in the folding process of this family of proteins. Nature Publishing Group UK 2020-12-03 /pmc/articles/PMC7713307/ /pubmed/33273582 http://dx.doi.org/10.1038/s41598-020-78008-8 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Grazioso, Rinaldo
García-Viñuales, Sara
D’Abrosca, Gianluca
Baglivo, Ilaria
Pedone, Paolo Vincenzo
Milardi, Danilo
Fattorusso, Roberto
Isernia, Carla
Russo, Luigi
Malgieri, Gaetano
The change of conditions does not affect Ros87 downhill folding mechanism
title The change of conditions does not affect Ros87 downhill folding mechanism
title_full The change of conditions does not affect Ros87 downhill folding mechanism
title_fullStr The change of conditions does not affect Ros87 downhill folding mechanism
title_full_unstemmed The change of conditions does not affect Ros87 downhill folding mechanism
title_short The change of conditions does not affect Ros87 downhill folding mechanism
title_sort change of conditions does not affect ros87 downhill folding mechanism
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7713307/
https://www.ncbi.nlm.nih.gov/pubmed/33273582
http://dx.doi.org/10.1038/s41598-020-78008-8
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