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The change of conditions does not affect Ros87 downhill folding mechanism
Downhill folding has been defined as a unique thermodynamic process involving a conformations ensemble that progressively loses structure with the decrease of protein stability. Downhill folders are estimated to be rather rare in nature as they miss an energetically substantial folding barrier that...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7713307/ https://www.ncbi.nlm.nih.gov/pubmed/33273582 http://dx.doi.org/10.1038/s41598-020-78008-8 |
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author | Grazioso, Rinaldo García-Viñuales, Sara D’Abrosca, Gianluca Baglivo, Ilaria Pedone, Paolo Vincenzo Milardi, Danilo Fattorusso, Roberto Isernia, Carla Russo, Luigi Malgieri, Gaetano |
author_facet | Grazioso, Rinaldo García-Viñuales, Sara D’Abrosca, Gianluca Baglivo, Ilaria Pedone, Paolo Vincenzo Milardi, Danilo Fattorusso, Roberto Isernia, Carla Russo, Luigi Malgieri, Gaetano |
author_sort | Grazioso, Rinaldo |
collection | PubMed |
description | Downhill folding has been defined as a unique thermodynamic process involving a conformations ensemble that progressively loses structure with the decrease of protein stability. Downhill folders are estimated to be rather rare in nature as they miss an energetically substantial folding barrier that can protect against aggregation and proteolysis. We have previously demonstrated that the prokaryotic zinc finger protein Ros87 shows a bipartite folding/unfolding process in which a metal binding intermediate converts to the native structure through a delicate barrier-less downhill transition. Significant variation in folding scenarios can be detected within protein families with high sequence identity and very similar folds and for the same sequence by varying conditions. For this reason, we here show, by means of DSC, CD and NMR, that also in different pH and ionic strength conditions Ros87 retains its partly downhill folding scenario demonstrating that, at least in metallo-proteins, the downhill mechanism can be found under a much wider range of conditions and coupled to other different transitions. We also show that mutations of Ros87 zinc coordination sphere produces a different folding scenario demonstrating that the organization of the metal ion core is determinant in the folding process of this family of proteins. |
format | Online Article Text |
id | pubmed-7713307 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-77133072020-12-03 The change of conditions does not affect Ros87 downhill folding mechanism Grazioso, Rinaldo García-Viñuales, Sara D’Abrosca, Gianluca Baglivo, Ilaria Pedone, Paolo Vincenzo Milardi, Danilo Fattorusso, Roberto Isernia, Carla Russo, Luigi Malgieri, Gaetano Sci Rep Article Downhill folding has been defined as a unique thermodynamic process involving a conformations ensemble that progressively loses structure with the decrease of protein stability. Downhill folders are estimated to be rather rare in nature as they miss an energetically substantial folding barrier that can protect against aggregation and proteolysis. We have previously demonstrated that the prokaryotic zinc finger protein Ros87 shows a bipartite folding/unfolding process in which a metal binding intermediate converts to the native structure through a delicate barrier-less downhill transition. Significant variation in folding scenarios can be detected within protein families with high sequence identity and very similar folds and for the same sequence by varying conditions. For this reason, we here show, by means of DSC, CD and NMR, that also in different pH and ionic strength conditions Ros87 retains its partly downhill folding scenario demonstrating that, at least in metallo-proteins, the downhill mechanism can be found under a much wider range of conditions and coupled to other different transitions. We also show that mutations of Ros87 zinc coordination sphere produces a different folding scenario demonstrating that the organization of the metal ion core is determinant in the folding process of this family of proteins. Nature Publishing Group UK 2020-12-03 /pmc/articles/PMC7713307/ /pubmed/33273582 http://dx.doi.org/10.1038/s41598-020-78008-8 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Grazioso, Rinaldo García-Viñuales, Sara D’Abrosca, Gianluca Baglivo, Ilaria Pedone, Paolo Vincenzo Milardi, Danilo Fattorusso, Roberto Isernia, Carla Russo, Luigi Malgieri, Gaetano The change of conditions does not affect Ros87 downhill folding mechanism |
title | The change of conditions does not affect Ros87 downhill folding mechanism |
title_full | The change of conditions does not affect Ros87 downhill folding mechanism |
title_fullStr | The change of conditions does not affect Ros87 downhill folding mechanism |
title_full_unstemmed | The change of conditions does not affect Ros87 downhill folding mechanism |
title_short | The change of conditions does not affect Ros87 downhill folding mechanism |
title_sort | change of conditions does not affect ros87 downhill folding mechanism |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7713307/ https://www.ncbi.nlm.nih.gov/pubmed/33273582 http://dx.doi.org/10.1038/s41598-020-78008-8 |
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