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Characteristics of the mitochondrial genome of Rana omeimontis and related species in Ranidae: Gene rearrangements and phylogenetic relationships

The Omei wood frog (Rana omeimontis), endemic to central China, belongs to the family Ranidae. In this study, we achieved detail knowledge about the mitogenome of the species. The length of the genome is 20,120 bp, including 13 protein‐coding genes (PCGs), 22 tRNA genes, two rRNA genes, and a noncod...

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Autores principales: Jiang, Lichun, Zhang, Min, Deng, Lu, Xu, Zhongwen, Shi, Hongyan, Jia, Xiaodong, Lai, Zhenli, Ruan, Qiping, Chen, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7713938/
https://www.ncbi.nlm.nih.gov/pubmed/33304496
http://dx.doi.org/10.1002/ece3.6824
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author Jiang, Lichun
Zhang, Min
Deng, Lu
Xu, Zhongwen
Shi, Hongyan
Jia, Xiaodong
Lai, Zhenli
Ruan, Qiping
Chen, Wei
author_facet Jiang, Lichun
Zhang, Min
Deng, Lu
Xu, Zhongwen
Shi, Hongyan
Jia, Xiaodong
Lai, Zhenli
Ruan, Qiping
Chen, Wei
author_sort Jiang, Lichun
collection PubMed
description The Omei wood frog (Rana omeimontis), endemic to central China, belongs to the family Ranidae. In this study, we achieved detail knowledge about the mitogenome of the species. The length of the genome is 20,120 bp, including 13 protein‐coding genes (PCGs), 22 tRNA genes, two rRNA genes, and a noncoding control region. Similar to other amphibians, we found that only nine genes (ND6 and eight tRNA genes) are encoded on the light strand (L) and other genes on the heavy strand (H). Totally, The base composition of the mitochondrial genome included 27.29% A, 28.85% T, 28.87% C, and 15.00% G, respectively. The control regions among the Rana species were found to exhibit rich genetic variability and A + T content. R. omeimontis was clustered together with R. chaochiaoensis in phylogenetic tree. Compared to R. amurensis and R. kunyuensi, it was more closely related to R. chaochiaoensis, and a new way of gene rearrangement (ND6‐trnE‐Cytb‐D‐loop‐trnL2 (CUN)‐ND5‐D‐loop) was also found in the mitogenome of R. amurensis and R. kunyuensi. Our results about the mitochondrial genome of R. omeimontis will contribute to the future studies on phylogenetic relationship and the taxonomic status of Rana and related Ranidae species.
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spelling pubmed-77139382020-12-09 Characteristics of the mitochondrial genome of Rana omeimontis and related species in Ranidae: Gene rearrangements and phylogenetic relationships Jiang, Lichun Zhang, Min Deng, Lu Xu, Zhongwen Shi, Hongyan Jia, Xiaodong Lai, Zhenli Ruan, Qiping Chen, Wei Ecol Evol Original Research The Omei wood frog (Rana omeimontis), endemic to central China, belongs to the family Ranidae. In this study, we achieved detail knowledge about the mitogenome of the species. The length of the genome is 20,120 bp, including 13 protein‐coding genes (PCGs), 22 tRNA genes, two rRNA genes, and a noncoding control region. Similar to other amphibians, we found that only nine genes (ND6 and eight tRNA genes) are encoded on the light strand (L) and other genes on the heavy strand (H). Totally, The base composition of the mitochondrial genome included 27.29% A, 28.85% T, 28.87% C, and 15.00% G, respectively. The control regions among the Rana species were found to exhibit rich genetic variability and A + T content. R. omeimontis was clustered together with R. chaochiaoensis in phylogenetic tree. Compared to R. amurensis and R. kunyuensi, it was more closely related to R. chaochiaoensis, and a new way of gene rearrangement (ND6‐trnE‐Cytb‐D‐loop‐trnL2 (CUN)‐ND5‐D‐loop) was also found in the mitogenome of R. amurensis and R. kunyuensi. Our results about the mitochondrial genome of R. omeimontis will contribute to the future studies on phylogenetic relationship and the taxonomic status of Rana and related Ranidae species. John Wiley and Sons Inc. 2020-10-31 /pmc/articles/PMC7713938/ /pubmed/33304496 http://dx.doi.org/10.1002/ece3.6824 Text en © 2020 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Jiang, Lichun
Zhang, Min
Deng, Lu
Xu, Zhongwen
Shi, Hongyan
Jia, Xiaodong
Lai, Zhenli
Ruan, Qiping
Chen, Wei
Characteristics of the mitochondrial genome of Rana omeimontis and related species in Ranidae: Gene rearrangements and phylogenetic relationships
title Characteristics of the mitochondrial genome of Rana omeimontis and related species in Ranidae: Gene rearrangements and phylogenetic relationships
title_full Characteristics of the mitochondrial genome of Rana omeimontis and related species in Ranidae: Gene rearrangements and phylogenetic relationships
title_fullStr Characteristics of the mitochondrial genome of Rana omeimontis and related species in Ranidae: Gene rearrangements and phylogenetic relationships
title_full_unstemmed Characteristics of the mitochondrial genome of Rana omeimontis and related species in Ranidae: Gene rearrangements and phylogenetic relationships
title_short Characteristics of the mitochondrial genome of Rana omeimontis and related species in Ranidae: Gene rearrangements and phylogenetic relationships
title_sort characteristics of the mitochondrial genome of rana omeimontis and related species in ranidae: gene rearrangements and phylogenetic relationships
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7713938/
https://www.ncbi.nlm.nih.gov/pubmed/33304496
http://dx.doi.org/10.1002/ece3.6824
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