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Automated facial recognition for wildlife that lack unique markings: A deep learning approach for brown bears

Emerging technologies support a new era of applied wildlife research, generating data on scales from individuals to populations. Computer vision methods can process large datasets generated through image‐based techniques by automating the detection and identification of species and individuals. With...

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Autores principales: Clapham, Melanie, Miller, Ed, Nguyen, Mary, Darimont, Chris T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7713984/
https://www.ncbi.nlm.nih.gov/pubmed/33304501
http://dx.doi.org/10.1002/ece3.6840
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author Clapham, Melanie
Miller, Ed
Nguyen, Mary
Darimont, Chris T.
author_facet Clapham, Melanie
Miller, Ed
Nguyen, Mary
Darimont, Chris T.
author_sort Clapham, Melanie
collection PubMed
description Emerging technologies support a new era of applied wildlife research, generating data on scales from individuals to populations. Computer vision methods can process large datasets generated through image‐based techniques by automating the detection and identification of species and individuals. With the exception of primates, however, there are no objective visual methods of individual identification for species that lack unique and consistent body markings. We apply deep learning approaches of facial recognition using object detection, landmark detection, a similarity comparison network, and an support vector machine‐based classifier to identify individuals in a representative species, the brown bear Ursus arctos. Our open‐source application, BearID, detects a bear’s face in an image, rotates and extracts the face, creates an “embedding” for the face, and uses the embedding to classify the individual. We trained and tested the application using labeled images of 132 known individuals collected from British Columbia, Canada, and Alaska, USA. Based on 4,674 images, with an 80/20% split for training and testing, respectively, we achieved a facial detection (ability to find a face) average precision of 0.98 and an individual classification (ability to identify the individual) accuracy of 83.9%. BearID and its annotated source code provide a replicable methodology for applying deep learning methods of facial recognition applicable to many other species that lack distinguishing markings. Further analyses of performance should focus on the influence of certain parameters on recognition accuracy, such as age and body size. Combining BearID with camera trapping could facilitate fine‐scale behavioral research such as individual spatiotemporal activity patterns, and a cost‐effective method of population monitoring through mark–recapture studies, with implications for species and landscape conservation and management. Applications to practical conservation include identifying problem individuals in human–wildlife conflicts, and evaluating the intrapopulation variation in efficacy of conservation strategies, such as wildlife crossings.
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spelling pubmed-77139842020-12-09 Automated facial recognition for wildlife that lack unique markings: A deep learning approach for brown bears Clapham, Melanie Miller, Ed Nguyen, Mary Darimont, Chris T. Ecol Evol Original Research Emerging technologies support a new era of applied wildlife research, generating data on scales from individuals to populations. Computer vision methods can process large datasets generated through image‐based techniques by automating the detection and identification of species and individuals. With the exception of primates, however, there are no objective visual methods of individual identification for species that lack unique and consistent body markings. We apply deep learning approaches of facial recognition using object detection, landmark detection, a similarity comparison network, and an support vector machine‐based classifier to identify individuals in a representative species, the brown bear Ursus arctos. Our open‐source application, BearID, detects a bear’s face in an image, rotates and extracts the face, creates an “embedding” for the face, and uses the embedding to classify the individual. We trained and tested the application using labeled images of 132 known individuals collected from British Columbia, Canada, and Alaska, USA. Based on 4,674 images, with an 80/20% split for training and testing, respectively, we achieved a facial detection (ability to find a face) average precision of 0.98 and an individual classification (ability to identify the individual) accuracy of 83.9%. BearID and its annotated source code provide a replicable methodology for applying deep learning methods of facial recognition applicable to many other species that lack distinguishing markings. Further analyses of performance should focus on the influence of certain parameters on recognition accuracy, such as age and body size. Combining BearID with camera trapping could facilitate fine‐scale behavioral research such as individual spatiotemporal activity patterns, and a cost‐effective method of population monitoring through mark–recapture studies, with implications for species and landscape conservation and management. Applications to practical conservation include identifying problem individuals in human–wildlife conflicts, and evaluating the intrapopulation variation in efficacy of conservation strategies, such as wildlife crossings. John Wiley and Sons Inc. 2020-11-06 /pmc/articles/PMC7713984/ /pubmed/33304501 http://dx.doi.org/10.1002/ece3.6840 Text en © 2020 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Clapham, Melanie
Miller, Ed
Nguyen, Mary
Darimont, Chris T.
Automated facial recognition for wildlife that lack unique markings: A deep learning approach for brown bears
title Automated facial recognition for wildlife that lack unique markings: A deep learning approach for brown bears
title_full Automated facial recognition for wildlife that lack unique markings: A deep learning approach for brown bears
title_fullStr Automated facial recognition for wildlife that lack unique markings: A deep learning approach for brown bears
title_full_unstemmed Automated facial recognition for wildlife that lack unique markings: A deep learning approach for brown bears
title_short Automated facial recognition for wildlife that lack unique markings: A deep learning approach for brown bears
title_sort automated facial recognition for wildlife that lack unique markings: a deep learning approach for brown bears
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7713984/
https://www.ncbi.nlm.nih.gov/pubmed/33304501
http://dx.doi.org/10.1002/ece3.6840
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