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Deep learning based automatic segmentation of metastasis hotspots in thorax bone SPECT images

SPECT imaging has been identified as an effective medical modality for diagnosis, treatment, evaluation and prevention of a range of serious diseases and medical conditions. Bone SPECT scan has the potential to provide more accurate assessment of disease stage and severity. Segmenting hotspot in bon...

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Autores principales: Lin, Qiang, Luo, Mingyang, Gao, Ruiting, Li, Tongtong, Man, Zhengxing, Cao, Yongchun, Wang, Haijun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7714246/
https://www.ncbi.nlm.nih.gov/pubmed/33270746
http://dx.doi.org/10.1371/journal.pone.0243253
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author Lin, Qiang
Luo, Mingyang
Gao, Ruiting
Li, Tongtong
Man, Zhengxing
Cao, Yongchun
Wang, Haijun
author_facet Lin, Qiang
Luo, Mingyang
Gao, Ruiting
Li, Tongtong
Man, Zhengxing
Cao, Yongchun
Wang, Haijun
author_sort Lin, Qiang
collection PubMed
description SPECT imaging has been identified as an effective medical modality for diagnosis, treatment, evaluation and prevention of a range of serious diseases and medical conditions. Bone SPECT scan has the potential to provide more accurate assessment of disease stage and severity. Segmenting hotspot in bone SPECT images plays a crucial role to calculate metrics like tumor uptake and metabolic tumor burden. Deep learning techniques especially the convolutional neural networks have been widely exploited for reliable segmentation of hotspots or lesions, organs and tissues in the traditional structural medical images (i.e., CT and MRI) due to their ability of automatically learning the features from images in an optimal way. In order to segment hotspots in bone SPECT images for automatic assessment of metastasis, in this work, we develop several deep learning based segmentation models. Specifically, each original whole-body bone SPECT image is processed to extract the thorax area, followed by image mirror, translation and rotation operations, which augments the original dataset. We then build segmentation models based on two commonly-used famous deep networks including U-Net and Mask R-CNN by fine-tuning their structures. Experimental evaluation conducted on a group of real-world bone SEPCT images reveals that the built segmentation models are workable on identifying and segmenting hotspots of metastasis in bone SEPCT images, achieving a value of 0.9920, 0.7721, 0.6788 and 0.6103 for PA (accuracy), CPA (precision), Rec (recall) and IoU, respectively. Finally, we conclude that the deep learning technology have the huge potential to identify and segment hotspots in bone SPECT images.
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spelling pubmed-77142462020-12-09 Deep learning based automatic segmentation of metastasis hotspots in thorax bone SPECT images Lin, Qiang Luo, Mingyang Gao, Ruiting Li, Tongtong Man, Zhengxing Cao, Yongchun Wang, Haijun PLoS One Research Article SPECT imaging has been identified as an effective medical modality for diagnosis, treatment, evaluation and prevention of a range of serious diseases and medical conditions. Bone SPECT scan has the potential to provide more accurate assessment of disease stage and severity. Segmenting hotspot in bone SPECT images plays a crucial role to calculate metrics like tumor uptake and metabolic tumor burden. Deep learning techniques especially the convolutional neural networks have been widely exploited for reliable segmentation of hotspots or lesions, organs and tissues in the traditional structural medical images (i.e., CT and MRI) due to their ability of automatically learning the features from images in an optimal way. In order to segment hotspots in bone SPECT images for automatic assessment of metastasis, in this work, we develop several deep learning based segmentation models. Specifically, each original whole-body bone SPECT image is processed to extract the thorax area, followed by image mirror, translation and rotation operations, which augments the original dataset. We then build segmentation models based on two commonly-used famous deep networks including U-Net and Mask R-CNN by fine-tuning their structures. Experimental evaluation conducted on a group of real-world bone SEPCT images reveals that the built segmentation models are workable on identifying and segmenting hotspots of metastasis in bone SEPCT images, achieving a value of 0.9920, 0.7721, 0.6788 and 0.6103 for PA (accuracy), CPA (precision), Rec (recall) and IoU, respectively. Finally, we conclude that the deep learning technology have the huge potential to identify and segment hotspots in bone SPECT images. Public Library of Science 2020-12-03 /pmc/articles/PMC7714246/ /pubmed/33270746 http://dx.doi.org/10.1371/journal.pone.0243253 Text en © 2020 Lin et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Lin, Qiang
Luo, Mingyang
Gao, Ruiting
Li, Tongtong
Man, Zhengxing
Cao, Yongchun
Wang, Haijun
Deep learning based automatic segmentation of metastasis hotspots in thorax bone SPECT images
title Deep learning based automatic segmentation of metastasis hotspots in thorax bone SPECT images
title_full Deep learning based automatic segmentation of metastasis hotspots in thorax bone SPECT images
title_fullStr Deep learning based automatic segmentation of metastasis hotspots in thorax bone SPECT images
title_full_unstemmed Deep learning based automatic segmentation of metastasis hotspots in thorax bone SPECT images
title_short Deep learning based automatic segmentation of metastasis hotspots in thorax bone SPECT images
title_sort deep learning based automatic segmentation of metastasis hotspots in thorax bone spect images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7714246/
https://www.ncbi.nlm.nih.gov/pubmed/33270746
http://dx.doi.org/10.1371/journal.pone.0243253
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